RetrogeneDB ID: | retro_cjac_4033 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | GL289951.1:491326..491946(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000020541 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C1QBP | ||
Ensembl ID: | ENSCJAG00000011352 | ||
Aliases: | None | ||
Description: | complement component 1, q subcomponent binding protein [Source:HGNC Symbol;Acc:1243] |
Percent Identity: | 75.6 % |
Parental protein coverage: | 73.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LHTEGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKLVQKVAGETITVTFNINNSIPPTF |
L.T..DKAFVDFL.DEIKEERKIQK.KTL...S.GWELELNGTEAKLV..VA.E.ITVTF.IN.SIPP.. | |
Retrocopy | LCTK*DKAFVDFLNDEIKEERKIQKNKTLSTLSEGWELELNGTEAKLVWTVAAEKITVTFTIN-SIPPKL |
Parental | DGEEEPSKGQKVEEQEPELTSTPNFVVEVIKNDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQST |
DGEEE.S..Q..EEQEP.LTST.NFVVEVI...GKK..VLDCHYPEDEVGQE..AESDIFSI.EVSFQST | |
Retrocopy | DGEEELSQEQELEEQEPKLTSTLNFVVEVIEDHGKKDPVLDCHYPEDEVGQEKKAESDIFSIKEVSFQST |
Parental | GNSEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFA-DELVELSTALEHQEYITFLEDLKSFVKSK |
G.SEWKD...TL.TDSLDWALYD.LM.FL.D....NTFA..ELVELSTAL.HQ.YI.FLEDLK.FVKS. | |
Retrocopy | GKSEWKDAKNTLSTDSLDWALYDYLMTFLVDQEAGNTFA<SELVELSTALKHQGYIAFLEDLKRFVKSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 16 .73 RPM |
SRP051959_heart | 0 .00 RPM | 14 .91 RPM |
SRP051959_kidney | 0 .00 RPM | 16 .88 RPM |
SRP051959_liver | 0 .00 RPM | 26 .40 RPM |
SRP051959_lung | 0 .00 RPM | 9 .87 RPM |
SRP051959_lymph_node | 0 .00 RPM | 14 .98 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 17 .32 RPM |
SRP051959_spleen | 0 .00 RPM | 13 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006043 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011352 | 6 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008887 | 3 retrocopies | |
Felis catus | ENSFCAG00000026474 | 3 retrocopies | |
Homo sapiens | ENSG00000108561 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002745 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000014882 | 13 retrocopies | |
Macaca mulatta | ENSMMUG00000006592 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009081 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000001610 | 5 retrocopies | |
Ochotona princeps | ENSOPRG00000013150 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007870 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000008631 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002466 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002441 | 2 retrocopies |