RetrogeneDB ID: | retro_meug_988 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold252297:2403..3007(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C1QBP | ||
Ensembl ID: | ENSMEUG00000014882 | ||
Aliases: | None | ||
Description: | complement component 1, q subcomponent binding protein [Source:HGNC Symbol;Acc:1243] |
Percent Identity: | 78.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | DKAFAEFLTDEIKEERKIQKHKSLPKMSGDWELGVQGTEAKLVRRLTGETITVTFNINNSIPPTFDDEPS |
D.AFAEFLT.EIKEERKIQKHKSLPKM..DWELGV.GTEAKLV.R..GE.ITVTFNINNS.P.TFDDEPS | |
Retrocopy | DQAFAEFLTNEIKEERKIQKHKSLPKMPKDWELGV*GTEAKLVWRFEGEMITVTFNINNSVPLTFDDEPS |
Parental | EGQKVQEQQEPELTSTPNFVVEVVKNDTKKALVLDCHYPENEVGQEDEDESDIFSIREVS-FQPTTESDW |
.GQKVQEQQEPELTSTPNF.VEV.K.D.KKALVLDCHY.E.EVGQEDED.SD.FSI.EVS.F.P...... | |
Retrocopy | VGQKVQEQQEPELTSTPNFLVEVMKDDIKKALVLDCHYTEYEVGQEDEDKSDVFSIQEVS>FSPPLNLTG |
Parental | KDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELIELSTALEHQEYINFLEDLKGFVKCQ |
..T..T.NTDSLD.A...HLM.FLA..GVDNTFADELIELS.ALEHQE.INFLEDLKGFVKCQ | |
Retrocopy | R-TQTTCNTDSLDLAPCNHLMNFLANCGVDNTFADELIELSMALEHQEHINFLEDLKGFVKCQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006043 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015542 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000011352 | 6 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008887 | 3 retrocopies | |
Felis catus | ENSFCAG00000026474 | 3 retrocopies | |
Homo sapiens | ENSG00000108561 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002745 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000014882 | 13 retrocopies | |
Macaca mulatta | ENSMMUG00000006592 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011246 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009081 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000001610 | 5 retrocopies | |
Ochotona princeps | ENSOPRG00000013150 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007870 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000008631 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002466 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002441 | 2 retrocopies |