RetrogeneDB ID:

retro_fcat_892

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B3:48317480..48317830(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000026474
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_892
GAATTGACATCTGCTCCCAGTTCCGTGGTTGAAGTTATAAAGATGATGGCGAGAAGGCCCTTGTGTTGGATTGTCACTAT
TTGGAGGATGAGGTTGGACAAGACGAAGAGAACAAGAGTGACATTTTCTCCATCGGGGAAGTGAGGTTTCAGTCCATTGG
AGAATTGGAATGGAAGAACATGTATTAAATACTCAACACAGATTCTCTGGACTGGGCTTTGTATGATCGCCTAACGGATT
TCCTTGTGGACCAAGGGGTGGAGGACACTTTTTCAGATGAGCTCAGCATGGCCCTGGGTCACCAGGAGAACAAAGCTTTT
CTCAGAGACCTCAAAGGTTTTGTCAAGAGC

ORF - retro_fcat_892 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.6 %
Parental protein coverage: 56.6 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalELTSTPNFVVEVIK-NGGKKALVLDCHYPEDEVGQEEEDESDIFAIREVSFQSVGESEWKDTNYTLNTDS
ELTS.P..VVEVIK...G.KALVLDCHY.EDEVGQ.EE..SDIF.I.EV.FQS.GE.EWK.....LNTDS
RetrocopyELTSAPSSVVEVIK<DDGEKALVLDCHYLEDEVGQDEENKSDIFSIGEVRFQSIGELEWKNMY*ILNTDS
ParentalLDWALYDHLMDFLADRGVDNTFADELVELSTALEHREYITFLEDLKGFVKS
LDWALYD.L.DFL.D.GV..TF.DEL...S.AL.H.E...FL.DLKGFVKS
RetrocopyLDWALYDRLTDFLVDQGVEDTFSDEL---SMALGHQENKAFLRDLKGFVKS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 29 .04 RPM
SRP017611_kidney 0 .00 RPM 50 .40 RPM
SRP017611_liver 0 .00 RPM 34 .98 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_892 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_892 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 59 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000060432 retrocopies
Canis familiaris ENSCAFG000000155423 retrocopies
Callithrix jacchus ENSCJAG000000113526 retrocopies
Dasypus novemcinctus ENSDNOG000000088873 retrocopies
Felis catus ENSFCAG00000026474 3 retrocopies
retro_fcat_1135, retro_fcat_1763, retro_fcat_892 ,
Homo sapiens ENSG000001085612 retrocopies
Gorilla gorilla ENSGGOG000000027455 retrocopies
Macropus eugenii ENSMEUG0000001488213 retrocopies
Macaca mulatta ENSMMUG000000065921 retrocopy
Mustela putorius furoENSMPUG000000112461 retrocopy
Nomascus leucogenys ENSNLEG000000090812 retrocopies
Otolemur garnettii ENSOGAG000000016105 retrocopies
Ochotona princeps ENSOPRG000000131501 retrocopy
Pongo abelii ENSPPYG000000078706 retrocopies
Pan troglodytes ENSPTRG000000086313 retrocopies
Pteropus vampyrus ENSPVAG000000024661 retrocopy
Sarcophilus harrisii ENSSHAG000000024412 retrocopies



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