RetrogeneDB ID: | retro_fcat_1135 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:154052127..154052586(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026474 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.96 % |
Parental protein coverage: | 73.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | EKITVTFNINNSIPPTFAGEEEP-SQGQKAEEQEPELTSTPNFVVEVIKNGGKKALVLDCHYPEDEVGQ- |
EK..VTFNINNSIPPTF.GEEEP.S.GQK.E.QEPELTS.PNF.VEVIKN.GKKAL..DCHYPEDE.GQ. | |
Retrocopy | EKRSVTFNINNSIPPTFDGEEEP<SLGQKVEQQEPELTSAPNFAVEVIKNVGKKALFPDCHYPEDEAGQ> |
Parental | EEEDESDIFAIREVSFQSV-GESEWKDTNYTLNTDSLDWAL-YDHLMDFLADRGVDNTFADELVELSTAL |
E.E....IF..REVSF.S..G.S.WKD.NYT.NTDSLDWAL..D.LMDF.A.RGVDNTFA.EL.ELSTAL | |
Retrocopy | EKEND--IFSLREVSF*ST<GKSVWKDMNYTFNTDSLDWAL>SDYLMDFVAGRGVDNTFAGELMELSTAL |
Parental | EHREYITFLEDLKGFVKSQ |
EH.E.I.FL.DL....KSQ | |
Retrocopy | EHQECIAFLQDLRRDLKSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .04 RPM |
SRP017611_kidney | 0 .10 RPM | 50 .40 RPM |
SRP017611_liver | 0 .10 RPM | 34 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006043 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015542 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000011352 | 6 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008887 | 3 retrocopies | |
Felis catus | ENSFCAG00000026474 | 3 retrocopies |
retro_fcat_1135 , retro_fcat_1763, retro_fcat_892,
|
Homo sapiens | ENSG00000108561 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002745 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000014882 | 13 retrocopies | |
Macaca mulatta | ENSMMUG00000006592 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011246 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009081 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000001610 | 5 retrocopies | |
Ochotona princeps | ENSOPRG00000013150 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007870 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000008631 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002466 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002441 | 2 retrocopies |