RetrogeneDB ID: | retro_mmul_1554 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 20:30204842..30205548(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2677 | ||
Ensembl ID: | ENSMMUG00000006592 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.41 % |
Parental protein coverage: | 84.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LLSVRAGSERRPGLLRPRGPCACGCGCSLLHTEGDKAFVDFLKDEIEEERKIQKHKTLPKMSGGWELELN |
LL.V.AG...R..L.R..G.C.C......L.T.G.KAFVDFL.DEI..ERKIQKHKTLPKM.GGWELELN | |
Retrocopy | LLRVCAGCAGRSHLRRSGG-CGCSVAAACLRTKGEKAFVDFLSDEIKKERKIQKHKTLPKMFGGWELELN |
Parental | GTEAKLVRKVAGEKIIVTFNIN-NSIPPTFDGEEEPTQKQKVEEQEPELTSTPNFVVEVIKNDGKKALVL |
GTEAKLV.KVAGEKI..T.NIN..SIPPTFDGE.E..Q.QKVEEQEP.LTSTPNFVVEVI.NDGKKALVL | |
Retrocopy | GTEAKLVWKVAGEKISDTCNIN<HSIPPTFDGEKELSQGQKVEEQEPQLTSTPNFVVEVIENDGKKALVL |
Parental | DCHYPEDEVGQEDEAESDIFSIREVSFQSSGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNT-FA |
DCHYPE.EVGQE..AESDIFSIREVSFQS.GESEWKD.N.TLNTDSLD.ALYDHL.DFL.D.G.DNT.F. | |
Retrocopy | DCHYPEAEVGQEEKAESDIFSIREVSFQSTGESEWKDVNNTLNTDSLD*ALYDHLVDFLVDQGMDNT<FS |
Parental | DELVELSTALEHQEYISFLEDLKRFVKSQ |
DELVELSTALE.QEYI.FLEDLK.FVK.Q | |
Retrocopy | DELVELSTALEQQEYITFLEDLKSFVKNQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 46 .84 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 36 .02 RPM |
SRP007412_cerebellum | 0 .13 RPM | 33 .19 RPM |
SRP007412_heart | 0 .00 RPM | 68 .31 RPM |
SRP007412_kidney | 0 .00 RPM | 94 .36 RPM |
SRP007412_liver | 0 .00 RPM | 38 .83 RPM |
SRP007412_testis | 0 .00 RPM | 11 .08 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1385 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006043 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011352 | 6 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008887 | 3 retrocopies | |
Felis catus | ENSFCAG00000026474 | 3 retrocopies | |
Homo sapiens | ENSG00000108561 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002745 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000014882 | 13 retrocopies | |
Macaca mulatta | ENSMMUG00000006592 | 1 retrocopy |
retro_mmul_1554 ,
|
Nomascus leucogenys | ENSNLEG00000009081 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000001610 | 5 retrocopies | |
Ochotona princeps | ENSOPRG00000013150 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007870 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000008631 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002466 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002441 | 2 retrocopies |