RetrogeneDB ID: | retro_cjac_5 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:100020740..100021052(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022513 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000036558 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELA |
MAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELA | |
Retrocopy | MAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELA |
Parental | EMKEKYEAIIEENKKLKAKLAQYEPPQEEKRAE |
EMKEKYEAIIEENKKLKAKLAQYEPPQEEKRAE | |
Retrocopy | EMKEKYEAIIEENKKLKAKLAQYEPPQEEKRAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .47 RPM | 3 .90 RPM |
SRP051959_heart | 0 .28 RPM | 2 .53 RPM |
SRP051959_kidney | 0 .67 RPM | 5 .95 RPM |
SRP051959_liver | 0 .39 RPM | 2 .49 RPM |
SRP051959_lung | 0 .47 RPM | 4 .96 RPM |
SRP051959_lymph_node | 0 .41 RPM | 4 .66 RPM |
SRP051959_skeletal_muscle | 0 .15 RPM | 2 .18 RPM |
SRP051959_spleen | 0 .82 RPM | 5 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030622 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013136 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000036558 | 1 retrocopy |
retro_cjac_5 ,
|
Cavia porcellus | ENSCPOG00000020447 | 1 retrocopy | |
Homo sapiens | ENSG00000214114 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005810 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000020514 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000000315 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028647 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011814 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022203 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000024435 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000001515 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000565 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017166 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000003649 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000021547 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000005690 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009583 | 1 retrocopy |