RetrogeneDB ID: | retro_cpor_1249 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_6:24020547..24021163(-) | ||
Located in intron of: | ENSCPOG00000009162 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000002962 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDSPEWKER |
MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDSPEWKE. | |
Retrocopy | MAAAKDTHEDHDTSTENADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDSPEWKEC |
Parental | GTGDVKLLKHKDKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADEYPKPELLAI |
GTGDVKLLKHKDKGTIRLLMRRDKTLKICANHYI.PMMELKPNAGSDRAWVWNTHADF.DEYP.PELLAI | |
Retrocopy | GTGDVKLLKHKDKGTIRLLMRRDKTLKICANHYI*PMMELKPNAGSDRAWVWNTHADFVDEYPTPELLAI |
Parental | RFLNAENAQKFKTKFEECRKEIEE-RPPAGLGKNDNAEKVAEKLEALSVKENKDPGKETEEKSEKQ |
RFLNAENAQKFKTKFEECRKEIEE.....GLGKNDNAEKVAEKLEALSVKENKDPGKET.EKSEKQ | |
Retrocopy | RFLNAENAQKFKTKFEECRKEIEE>XXXXGLGKNDNAEKVAEKLEALSVKENKDPGKETKEKSEKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .35 RPM | 16 .97 RPM |
SRP017611_kidney | 0 .42 RPM | 18 .01 RPM |
SRP017611_liver | 0 .52 RPM | 9 .31 RPM |
SRP040447_lung | 0 .25 RPM | 23 .88 RPM |
SRP040447_skeletal_muscle | 0 .18 RPM | 10 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000010749 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002962 | 1 retrocopy |
retro_cpor_1249 ,
|
Dipodomys ordii | ENSDORG00000011317 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015996 | 2 retrocopies | |
Homo sapiens | ENSG00000099901 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000000784 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016620 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000017535 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020100 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010312 | 5 retrocopies | |
Mus musculus | ENSMUSG00000005732 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005684 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000034333 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000011593 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000001884 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006873 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000026840 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000013573 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008142 | 2 retrocopies |