RetrogeneDB ID:

retro_meug_1795

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold59509:3886..4461(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RANBP1
Ensembl ID:ENSMEUG00000016620
Aliases:None
Description:RAN binding protein 1 [Source:HGNC Symbol;Acc:9847]


Retrocopy-Parental alignment summary:






>retro_meug_1795
GAAGCTCATGAGAAAGACCCCTCCACAGAGGATGTGAATGACTTGAACCCTGATCTGCAGTTTGAACTCATAGTGTCTCT
TGATGAGCAGGAGATTAAGACCCTAAAAGAAGATGAAGAGCTCTTTTAAGATGCAGGCCAAGCTATTCGGATTTGCATCT
GAGAATGATCTTCTAGAATGGAAAGAGTAAGAGATGGGTGACTTGAAGCTGCTGAAACACAAGGAGAAAAGGACTATGTA
CCTCCTCATCAGAAGGGACAAAACGCTGAAGATCTGGGCAAATCATTATAAAACGTCATTGAATGAGCCGAAGGCCAACT
CAGGCAGTCACAGGGCCCGGGTCTGGAACACACATGCTCACTTTGCTGATGAAAGTCCCAAGCCTAAATTACTGGCAAAT
CAATCCCTAAATGCAGAAAAAGCCCAGAAGTGTAAGACAAAATTTGAAGAATGCAGGAATGATATTGAAGAAAGAGTAAA
GAACAGGAGCAGACAAAGAAAACAGCAAGAAAAAAATGATGGAGAAGTTGCTGGGGCTGTAAGTGAAGGAGAAGCAGAAG
GAAGGCAGTCACAAG

ORF - retro_meug_1795 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 66.15 %
Parental protein coverage: 98.97 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalETHEEHDTSTENVDDSNHDPQFEPIVSLPEQEIKTLEEDEEELF-KMRAKLFRFASENDLPEWKERGTGD
E.HE..D.STE.V.D.N.D.QFE.IVSL.EQEIKTL.EDE.ELF.KM.AKLF.FASENDL.EWKE...GD
RetrocopyEAHEK-DPSTEDVNDLNPDLQFELIVSLDEQEIKTLKEDE-ELF>KMQAKLFGFASENDLLEWKE*EMGD
ParentalVKLLKHKEKGTIRLLMRRDKTLKICANHYITPLMELKPNAGSDRAWVWNTHADFADESPKPELLAIRFLN
.KLLKHKEK.T..LL.RRDKTLKI.ANHY.T.L.E.K.N.GS.RA.VWNTHA.FADESPKP.LLA...LN
RetrocopyLKLLKHKEKRTMYLLIRRDKTLKIWANHYKTSLNEPKANSGSHRARVWNTHAHFADESPKPKLLANQSLN
ParentalAENAQKFKAKFEECRNEIEEKEKKAGAGKENTD-KVVEKFSELSVKEEKKEGAEK
AE.AQK.K.KFEECRN.IEE..K...........K..EK...L.VKE..KEG..K
RetrocopyAEKAQKCKTKFEECRNDIEERVKNRSRQRKQQE>KMMEKLLGL*VKEKQKEGSHK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1795 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1795 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 43 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000107491 retrocopy
Cavia porcellus ENSCPOG000000029621 retrocopy
Dipodomys ordii ENSDORG000000113172 retrocopies
Echinops telfairi ENSETEG000000159962 retrocopies
Homo sapiens ENSG000000999012 retrocopies
Gorilla gorilla ENSGGOG000000007841 retrocopy
Macropus eugenii ENSMEUG00000016620 8 retrocopies
Myotis lucifugus ENSMLUG000000175351 retrocopy
Macaca mulatta ENSMMUG000000201001 retrocopy
Monodelphis domestica ENSMODG000000103125 retrocopies
Mus musculus ENSMUSG000000057321 retrocopy
Nomascus leucogenys ENSNLEG000000056842 retrocopies
Otolemur garnettii ENSOGAG000000343332 retrocopies
Pongo abelii ENSPPYG000000115934 retrocopies
Rattus norvegicus ENSRNOG000000018844 retrocopies
Sarcophilus harrisii ENSSHAG000000068731 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000268402 retrocopies
Tarsius syrichta ENSTSYG000000135731 retrocopy
Tursiops truncatus ENSTTRG000000081422 retrocopies



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