Parental gene:

Ranbp1, ENSRNOG00000001884

Aliases:None
Description:ran-specific GTPase-activating protein [Source:RefSeq peptide;Acc:NP_001101794]
Organism:Rat (Rattus norvegicus)
Coordinates:11:89984522..89992756(+)


>ENSRNOG00000001884
ATGGCGGCCGCCAAGGACAGTCACGAGGACCACGATACTTCCACAGAGAATGCAGAGGAGTCCAACCACGACCCCCAGTT
CGAGCCAATAGTTTCTCTTCCTGAGCAAGAAATTAAAACACTGGAGGAAGATGAAGAGGAACTTTTTAAGATGCGTGCAA
AGCTGTTCCGGTTTGCTTCAGAGAATGACCTCCCAGAATGGAAGGAGCGAGGCACTGGAGACGTCAAGCTTCTGAAGCAT
AAGGAGAAAGGGACCATCCGCCTTCTCATGAGGAGGGACAAAACCTTGAAGATATGCGCCAACCACTATATCACACCAAT
GATGGAGCTGAAGCCGAATGCTGGCAGTGACCGCGCCTGGGTCTGGAATACCCACGCCGACTTTGCTGACGAGTGTCCCA
AGCCTGAGCTGCTTGCCATCCGCTTCCTAAATGCTGAGAACGCACAAAAGTTCAAAACAAAGTTCGAAGAATGCAGGAAA
GAAATTGAAGAGAGAGAAAAGAAAGGACCAGGCAAAAATGATAATGCTGAAAAGGTGGCTGAGAAGCTGGAAGCCCTTTC
AGTGAGGGAGGCCAGAGACGAGGCTGAAGAGAAGTCTGAGGAGAAGCAATGA

Library Parental gene expression (RPM)
SRP017611_brain 30 .27 RPM
SRP017611_kidney 19 .54 RPM
SRP017611_liver 9 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000010749 ortholog_one2many 1 retrogene
retro_cjac_2619,
Cavia porcellus ENSCPOG00000002962 ortholog_one2many 1 retrogene
retro_cpor_1249,
Dipodomys ordii ENSDORG00000011317 ortholog_one2one 2 retrogenes
retro_dord_241, retro_dord_602,
Echinops telfairi ENSETEG00000015996 ortholog_one2one 2 retrogenes
retro_etel_1018, retro_etel_1518,
Homo sapiens ENSG00000099901 ortholog_one2one 2 retrogenes
retro_hsap_1727, retro_hsap_4797,
Gorilla gorilla ENSGGOG00000000784 possible_ortholog 1 retrogene
retro_ggor_170,
Macropus eugenii ENSMEUG00000016620 ortholog_one2one 8 retrogenes
retro_meug_1064, retro_meug_1553, retro_meug_1670, retro_meug_1795, retro_meug_272, retro_meug_422, retro_meug_657, retro_meug_753,
Myotis lucifugus ENSMLUG00000017535 ortholog_one2one 1 retrogene
retro_mluc_1429,
Macaca mulatta ENSMMUG00000020100 ortholog_one2one 1 retrogene
retro_mmul_1215,
Monodelphis domestica ENSMODG00000010312 ortholog_one2many 5 retrogenes
retro_mdom_1290, retro_mdom_1397, retro_mdom_1406, retro_mdom_1996, retro_mdom_288,
Mus musculus ENSMUSG00000005732 ortholog_one2one 1 retrogene
retro_mmus_3632,
Nomascus leucogenys ENSNLEG00000005684 ortholog_one2one 2 retrogenes
retro_nleu_2991, retro_nleu_934,
Otolemur garnettii ENSOGAG00000034333 ortholog_one2one 2 retrogenes
retro_ogar_1428, retro_ogar_2735,
Pongo abelii ENSPPYG00000011593 ortholog_one2one 4 retrogenes
retro_pabe_1438, retro_pabe_1470, retro_pabe_3731, retro_pabe_943,
Sarcophilus harrisii ENSSHAG00000006873 ortholog_one2many 1 retrogene
retro_shar_9,
Ictidomys tridecemlineatus ENSSTOG00000026840 ortholog_one2many 2 retrogenes
retro_itri_1579, retro_itri_345,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_811 95.57 100.00
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2. retro_rnor_884 93.14 100.00
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3. retro_rnor_907 92.20 68.97
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4. retro_rnor_1817 52.45 67.49
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Download FASTA sequences of all ENSRNOG00000001884 retrocopies