Parental gene: | Ranbp1, ENSRNOG00000001884 |
| Aliases: | None |
| Description: | ran-specific GTPase-activating protein [Source:RefSeq peptide;Acc:NP_001101794] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 11:89984522..89992756(+) |
>ENSRNOG00000001884
ATGGCGGCCGCCAAGGACAGTCACGAGGACCACGATACTTCCACAGAGAATGCAGAGGAGTCCAACCACGACCCCCAGTT
CGAGCCAATAGTTTCTCTTCCTGAGCAAGAAATTAAAACACTGGAGGAAGATGAAGAGGAACTTTTTAAGATGCGTGCAA
AGCTGTTCCGGTTTGCTTCAGAGAATGACCTCCCAGAATGGAAGGAGCGAGGCACTGGAGACGTCAAGCTTCTGAAGCAT
AAGGAGAAAGGGACCATCCGCCTTCTCATGAGGAGGGACAAAACCTTGAAGATATGCGCCAACCACTATATCACACCAAT
GATGGAGCTGAAGCCGAATGCTGGCAGTGACCGCGCCTGGGTCTGGAATACCCACGCCGACTTTGCTGACGAGTGTCCCA
AGCCTGAGCTGCTTGCCATCCGCTTCCTAAATGCTGAGAACGCACAAAAGTTCAAAACAAAGTTCGAAGAATGCAGGAAA
GAAATTGAAGAGAGAGAAAAGAAAGGACCAGGCAAAAATGATAATGCTGAAAAGGTGGCTGAGAAGCTGGAAGCCCTTTC
AGTGAGGGAGGCCAGAGACGAGGCTGAAGAGAAGTCTGAGGAGAAGCAATGA
ATGGCGGCCGCCAAGGACAGTCACGAGGACCACGATACTTCCACAGAGAATGCAGAGGAGTCCAACCACGACCCCCAGTT
CGAGCCAATAGTTTCTCTTCCTGAGCAAGAAATTAAAACACTGGAGGAAGATGAAGAGGAACTTTTTAAGATGCGTGCAA
AGCTGTTCCGGTTTGCTTCAGAGAATGACCTCCCAGAATGGAAGGAGCGAGGCACTGGAGACGTCAAGCTTCTGAAGCAT
AAGGAGAAAGGGACCATCCGCCTTCTCATGAGGAGGGACAAAACCTTGAAGATATGCGCCAACCACTATATCACACCAAT
GATGGAGCTGAAGCCGAATGCTGGCAGTGACCGCGCCTGGGTCTGGAATACCCACGCCGACTTTGCTGACGAGTGTCCCA
AGCCTGAGCTGCTTGCCATCCGCTTCCTAAATGCTGAGAACGCACAAAAGTTCAAAACAAAGTTCGAAGAATGCAGGAAA
GAAATTGAAGAGAGAGAAAAGAAAGGACCAGGCAAAAATGATAATGCTGAAAAGGTGGCTGAGAAGCTGGAAGCCCTTTC
AGTGAGGGAGGCCAGAGACGAGGCTGAAGAGAAGTCTGAGGAGAAGCAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 9 .01 RPM |
| SRP017611_kidney | 19 .54 RPM |
| SRP017611_brain | 30 .27 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000010749 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000002962 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000011317 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000015996 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000099901 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000000784 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000016620 | ortholog_one2one | 8 retrogenes | |
| Myotis lucifugus | ENSMLUG00000017535 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000020100 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000010312 | ortholog_one2many | 5 retrogenes | |
| Mus musculus | ENSMUSG00000005732 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000005684 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000034333 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000011593 | ortholog_one2one | 4 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000006873 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000026840 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_811 | 95.57 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_884 | 93.14 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_907 | 92.20 | 68.97 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_1817 | 52.45 | 67.49 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000001884 retrocopies