Parental gene: | RANBP1, ENSPPYG00000011593 |
| Aliases: | None |
| Description: | RAN binding protein 1 [Source:HGNC Symbol;Acc:9847] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 22:16005301..16015575(+) |
>ENSPPYG00000011593
ATGGCGGCCGCCAAGGACACTCATGAGGACCATGATACTTCCACTGAGAATACAGACGAGTCCAACCATGATCCTCAGTT
TGAGCCAATAGTTTCTCTTCCTGAGCAAGAAATTAAAACGCTGGAAGAAGATGAAGAGGAACTTTTTAAAATGCGGGCAA
AACTGTTCCGATTTGCCTCCGAGAACGATCTCCCAGAATGGAAGGAGCGAGGCACTGGTGACGTCAAGCTCCTGAAGCAC
AAGGAGAAGGGGGCCATCCGCCTCCTCATGCGGAGGGACAAGACCCTGAAGATCTGTGCCAACCACTACATCACGCCGAT
GATGGAGCTGAAGCCCAACGCAGGTAGCGACCGTGCCTGGGTCTGGAACACCCACGCTGACTTCGCCGATGAGTGCCCCA
AACCAGAGCTGCTGGCCATCCGCTTCCTGAATGCTGAGAATGCACAGAAATTCAAAACAAAGTTTGAAGAATGCAGGAAA
GAGATCGAAGAGAGAGAAAAGAAAGCAGGATCAGGCAAAAACGATCATGCTGAAAAAGTGGCGGAAAAGCTAGAAGCTCT
CTCGGTGAAGGAGGAGACCAAGGAGGATGCTGAGGAGAAGCAATAA
ATGGCGGCCGCCAAGGACACTCATGAGGACCATGATACTTCCACTGAGAATACAGACGAGTCCAACCATGATCCTCAGTT
TGAGCCAATAGTTTCTCTTCCTGAGCAAGAAATTAAAACGCTGGAAGAAGATGAAGAGGAACTTTTTAAAATGCGGGCAA
AACTGTTCCGATTTGCCTCCGAGAACGATCTCCCAGAATGGAAGGAGCGAGGCACTGGTGACGTCAAGCTCCTGAAGCAC
AAGGAGAAGGGGGCCATCCGCCTCCTCATGCGGAGGGACAAGACCCTGAAGATCTGTGCCAACCACTACATCACGCCGAT
GATGGAGCTGAAGCCCAACGCAGGTAGCGACCGTGCCTGGGTCTGGAACACCCACGCTGACTTCGCCGATGAGTGCCCCA
AACCAGAGCTGCTGGCCATCCGCTTCCTGAATGCTGAGAATGCACAGAAATTCAAAACAAAGTTTGAAGAATGCAGGAAA
GAGATCGAAGAGAGAGAAAAGAAAGCAGGATCAGGCAAAAACGATCATGCTGAAAAAGTGGCGGAAAAGCTAGAAGCTCT
CTCGGTGAAGGAGGAGACCAAGGAGGATGCTGAGGAGAAGCAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 17 .31 RPM |
| SRP007412_cerebellum | 21 .52 RPM |
| SRP007412_heart | 5 .21 RPM |
| SRP007412_kidney | 10 .97 RPM |
| SRP007412_liver | 15 .03 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000010749 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000002962 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000011317 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000015996 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000099901 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000000784 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000016620 | ortholog_one2one | 8 retrogenes | |
| Myotis lucifugus | ENSMLUG00000017535 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000020100 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000010312 | ortholog_one2many | 5 retrogenes | |
| Mus musculus | ENSMUSG00000005732 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000005684 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000034333 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000001884 | ortholog_one2one | 4 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000006873 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000026840 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_943 | 84.74 | 94.53 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1438 | 84.42 | 98.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1470 | 65.38 | 50.25 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_3731 | 95.52 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000011593 retrocopies