RetrogeneDB ID: | retro_cpor_135 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_0:56501936..56502318(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAQ | ||
Ensembl ID: | ENSCPOG00000011321 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.32 % |
Parental protein coverage: | 56.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | ELRSICTTVLELLDKYLIANATNPESKVFYLKMKGDYFRYLAEVACGDDR-KQTIDNSQGAYQEAFDISK |
E.......VL.LL..YLIA..TNP.S.VFYLK.KGDYF.YL..V.C..D..KQT.DNSQGA.QEAF.I.. | |
Retrocopy | EENGVTAVVLKLLNRYLIA--TNPGSQVFYLKVKGDYFHYLTDVTCRSDG<KQTVDNSQGAHQEAFEIG- |
Parental | KEMQPTH-PIRL-GLALNFSVFYYEILNN-PELACTLAKTAFDEAIAELDTLNE-DSYKDSTLIMQLL |
KEM..TH.PI.L.GLA.NFS..Y.EIL...PEL.CTLAK..FDEA..ELDTL...D.YKDST...QLL | |
Retrocopy | KEMRSTH<PICL<GLAVNFSIPYHEILST<PELVCTLAK-SFDEALTELDTLSK<DCYKDSTVFRQLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 74 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 103 .95 RPM |
SRP017611_liver | 0 .00 RPM | 22 .20 RPM |
SRP040447_lung | 0 .03 RPM | 108 .75 RPM |
SRP040447_skeletal_muscle | 0 .04 RPM | 18 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008618 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000008007 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011321 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000020285 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000015359 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000005383 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014740 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013534 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010482 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008104 | 5 retrocopies | |
Sorex araneus | ENSSARG00000012476 | 4 retrocopies |