RetrogeneDB ID: | retro_cpor_592 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_2:7752404..7753114(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSCPOG00000020285 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.84 % |
Parental protein coverage: | 97.96 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 8 |
Parental | DKNELVQKAKLAEQAERY-DDMAACMKSV-TEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKT |
DKNEL..K.KL..QAE...DDMAAC.KS...EQG...SN..RN..SV.YKN.VG..RSS.R..SS...K. | |
Retrocopy | DKNELL*KPKLTQQAELI>DDMAAC-KSI<NEQGVG*SNKKRNIPSVTYKNAVGSHRSS*RLISSTKLKI |
Parental | EGAE-KKQQMAREYREKIETELRDICNDVLSLLEKFLI-PNASQAES-KVFY-LKMKGDYYRYLAEVAA- |
E..E..KQQMA..YR.KI...L..I.ND.L..LEKFL..PN...A.S...FY.LK.KG....YLAEVA.. | |
Retrocopy | EDTE>QKQQMADIYR*KIGANLKFIYNDILLVLEKFLA<PNVLKAKS<QFFY<LKIKGNNLNYLAEVAT< |
Parental | GDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELD |
.D....I...SQ..Y.EAF.ISK.EM.PT..I.L.LAL.FSVF..EILNS..K.C.LAK..F.....EL. | |
Retrocopy | TDAENVIGHWSQ*SYLEAFQISKNEMRPTQSI*LSLALSFSVFCCEILNSLKKFCCLAKVIFEGPVDELH |
Parental | TLSEES-YKDSTLIMQLLRDNLTLWTSDTQGDEAEAGE |
.L.....Y.DS.L.MQ.LRDNLTL...DTQ..EAE.GE | |
Retrocopy | ILNKNN<YEDSIL*MQTLRDNLTL*ILDTQA-EAEKGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 310 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 57 .89 RPM |
SRP017611_liver | 0 .00 RPM | 21 .33 RPM |
SRP040447_lung | 0 .00 RPM | 92 .13 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 17 .82 RPM |