RetrogeneDB ID: | retro_cpor_1461 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_88:615987..616625(-) | ||
Located in intron of: | ENSCPOG00000000142 | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000020262 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C18ORF21 | ||
Ensembl ID: | ENSCPOG00000025449 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MRQKHYLEAAARSLQDSCPGQARYLLWTYSSSHDDKSTFEETCPYCFQLLVLDNSRVRLKPKAKLTPRIQ |
MRQK.YLEA.ARSLQDSCPGQARYLLWTYSSSHDDKSTFEETC.YCFQLLVLDNSRVRLKPKAKLTPRIQ | |
Retrocopy | MRQKYYLEAVARSLQDSCPGQARYLLWTYSSSHDDKSTFEETCLYCFQLLVLDNSRVRLKPKAKLTPRIQ |
Parental | KLLNREARTHTLSFKEAKIVKKYRDSKNVLSITCKTCNRTVKHHGKSRSFLSALKNVPATPTSKLGPKRP |
KLLN.EARTHTLSFK.AKIVKKYRDSKNVL.ITCKTCNRTVKHHGKSRSFLSALKNVPATPTSKLGPKRP | |
Retrocopy | KLLNPEARTHTLSFKKAKIVKKYRDSKNVLLITCKTCNRTVKHHGKSRSFLSALKNVPATPTSKLGPKRP |
Parental | EKKTSSSTDVSDSKGQSPAFIFRTPPSGQSTPICSSKSGSKRKKHFSQLKML-LSQSESQKDPKVDFKSF |
EKKTSSST.VSDSKGQSPAFIFRTP.SGQSTPICSSKSGSKRKKHFSQLKML..SQSESQKDPKVDFKSF | |
Retrocopy | EKKTSSSTNVSDSKGQSPAFIFRTPTSGQSTPICSSKSGSKRKKHFSQLKML<ASQSESQKDPKVDFKSF |
Parental | LSSL |
LSSL | |
Retrocopy | LSSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .87 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .48 RPM |
SRP017611_liver | 0 .04 RPM | 4 .14 RPM |
SRP040447_lung | 0 .03 RPM | 6 .68 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 4 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000029548 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021041 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000025449 | 1 retrocopy |
retro_cpor_1461 ,
|
Felis catus | ENSFCAG00000000626 | 1 retrocopy | |
Homo sapiens | ENSG00000141428 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026334 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018782 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025605 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024273 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006237 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000028046 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000011163 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009110 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009973 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009174 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000016670 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010817 | 2 retrocopies |