RetrogeneDB ID: | retro_tsyr_1787 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_587595:43..648(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C18orf21 | ||
Ensembl ID: | ENSTSYG00000010817 | ||
Aliases: | None | ||
Description: | chromosome 18 open reading frame 21 [Source:HGNC Symbol;Acc:28802] |
Percent Identity: | 80. % |
Parental protein coverage: | 90.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | QARYLLWTYNSSSHD-KSTFEETCPYCFQLLILDNS-RVRLKPKAKLTPKIQKLLNREARNYTLGCKEAK |
.A..LLWT..SSS.D.KSTF.ETC.YCFQLL.L.NS.RV.LKPKAKLTPKIQ.LL..EA.NY...CKEAK | |
Retrocopy | RAGCLLWTNSSSSQDDKSTFKETCLYCFQLLVLYNS>RVCLKPKAKLTPKIQ*LLKQEAGNYMFSCKEAK |
Parental | IVKKYKDSKSVLLITCKTCNRTVKHHGKSRSFLSTLKSSPTTSASKLSLKTTERKTLSSTNVNHDTPGSK |
IVKKYKDSKSVLLITCK.CNRTVKHHGKSRSFLS.LKS.PTT..SKLSLKT.ERKTLSS.N.NHD.P.SK | |
Retrocopy | IVKKYKDSKSVLLITCKMCNRTVKHHGKSRSFLSALKSYPTTPISKLSLKTAERKTLSSANLNHDIPSSK |
Parental | GKS-PASIFRTPTSGQS-ASTCSSKSVSKTKKHFSQLKMLLSQNESQKNSKVDFRNFLSSLKNGL |
GKS.PASIFRTPT.GQS..STC.SKS.SKT.K.FSQLKMLLSQNESQ.NS.V.FRNFLSSLKNGL | |
Retrocopy | GKS<PASIFRTPTFGQS<TSTCFSKSMSKTMKYFSQLKMLLSQNESQNNSEVHFRNFLSSLKNGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000029548 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021041 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000025449 | 1 retrocopy | |
Felis catus | ENSFCAG00000000626 | 1 retrocopy | |
Homo sapiens | ENSG00000141428 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026334 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018782 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025605 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024273 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006237 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000028046 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000011163 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009110 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009973 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009174 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000016670 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010817 | 2 retrocopies |
retro_tsyr_1675, retro_tsyr_1787 ,
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