RetrogeneDB ID: | retro_cpor_407 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_143:1310198..1310782(-) | ||
Located in intron of: | ENSCPOG00000010588 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS9 | ||
Ensembl ID: | ENSCPOG00000020893 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MPVARSWVCRKTYVTPRRPFEKSRLDQ-ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPR |
MPV.RSWVC.KTY.TP.R.F.KS.LDQ.ELKLI.EYGL.N..EVWRVKFTLAKI.KAA..LLTLDEKDP. | |
Retrocopy | MPVTRSWVCCKTYITPQRSFKKSCLDQ<ELKLICEYGLWNRYEVWRVKFTLAKICKAAWGLLTLDEKDPQ |
Parental | RLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDF--LERRLQTQVFKLGLA-KSIHHARVLIRQRHIR |
.LF.GN.L...LV.I.VLD.GKM.LDYIL.LK.ED...LER.LQTQVFKLGLA..SIHH..VLIRQRHIR | |
Retrocopy | YLFQGNTLQP*LVLISVLDDGKMRLDYILDLKTEDLKTLERGLQTQVFKLGLA<QSIHHKCVLIRQRHIR |
Parental | VRKQVVNIPSFIVRL-DSQKHIDFSLRSPYGGGRPGRVKRKN-AKKGQGGAGAGDDEEED |
VRK.VVN.PSFI....DSQKHI.FSL..PY..G..G..KRKN..KKGQG.A.A..D.EED | |
Retrocopy | VRKRVVNTPSFILYR<DSQKHINFSLHCPYWEGCLGHLKRKN<SKKGQGRARAKEDKEED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 108 .67 RPM |
SRP017611_liver | 0 .00 RPM | 88 .40 RPM |
SRP040447_lung | 0 .05 RPM | 165 .52 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 189 .60 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000001130 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000020893 | 2 retrocopies |
retro_cpor_1457, retro_cpor_407 ,
|
Gorilla gorilla | ENSGGOG00000027839 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000010394 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006314 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011449 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011355 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000049813 | 3 retrocopies |