RetrogeneDB ID: | retro_ggor_32 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 21:24582126..24582486(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000027931 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS9 | ||
Ensembl ID: | ENSGGOG00000027839 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.24 % |
Parental protein coverage: | 55.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR |
MP.A.SWVCR.TYVTP.RPFEK..LDQ.LKLIGEYG..NK.EVWRVKFTL.KI.KAARELLTLDEKDPR. | |
Retrocopy | MPAAQSWVCRQTYVTPQRPFEKTHLDQKLKLIGEYGFQNKCEVWRVKFTLVKIHKAARELLTLDEKDPRH |
Parental | LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLE |
LFEG.ALL..LV..GVLDEGKMKLDYILGLKI.DFLE | |
Retrocopy | LFEGIALLQWLVHTGVLDEGKMKLDYILGLKINDFLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .29 RPM | 152 .97 RPM |
SRP007412_cerebellum | 0 .16 RPM | 163 .07 RPM |
SRP007412_heart | 0 .13 RPM | 172 .27 RPM |
SRP007412_kidney | 0 .33 RPM | 228 .90 RPM |
SRP007412_liver | 0 .05 RPM | 364 .65 RPM |
SRP007412_testis | 0 .00 RPM | 162 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1845 |
Macaca mulatta | retro_mmul_1664 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000001130 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000020893 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000027839 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000010394 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006333 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006314 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011449 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011355 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000049813 | 3 retrocopies |