RetrogeneDB ID: | retro_rnor_30 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:14543357..14543873(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000024113 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS9 | ||
Ensembl ID: | ENSRNOG00000049813 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.25 % |
Parental protein coverage: | 90.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLD |
PF.KSRLDQEL..IG.YG.RNK.E...VKFTLAK..KAA.ELL.LDEKD.RR.FEGNALLRRLV..GVLD | |
Retrocopy | PFTKSRLDQEL--IGAYGPRNKGE---VKFTLAKSCKAAQELLMLDEKDIRRPFEGNALLRRLVHTGVLD |
Parental | EGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHID |
EGKM.LDYIL.LKIEDFLER.LQTQVFK.G..K.IHHARVLIRQRHIRV.KQVVN.PS..VRLDSQKHID | |
Retrocopy | EGKMRLDYILSLKIEDFLERWLQTQVFKRGRVKIIHHARVLIRQRHIRVHKQVVNSPSYNVRLDSQKHID |
Parental | FSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED |
FSL.SP.G.GRPGRVKRKNAK.G.GGAGAGDDEEED | |
Retrocopy | FSLHSPFGVGRPGRVKRKNAKEGRGGAGAGDDEEED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000001130 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000020893 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000027839 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022552 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000010394 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006333 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006314 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010377 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000011449 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011355 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000049813 | 3 retrocopies |
retro_rnor_2082, retro_rnor_30 , retro_rnor_78,
|