RetrogeneDB ID: | retro_rnor_892 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 12:32130556..32131030(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps9 | ||
Ensembl ID: | ENSRNOG00000011355 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S9 [Source:UniProtKB/Swiss-Prot;Acc:P29314] |
Percent Identity: | 90.68 % |
Parental protein coverage: | 82.99 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR |
.PVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLA...KAA.ELLTL.EKDPRR | |
Retrocopy | IPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLA---KAAQELLTLVEKDPRR |
Parental | LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQ |
L.EGNAL.R.LV.IGVLDEGKMKLD.ILGLKIEDFLERRLQT.VFKLGLAKSIHH..VLIRQRHIRV.KQ | |
Retrocopy | LSEGNALPR*LVWIGVLDEGKMKLDDILGLKIEDFLERRLQTRVFKLGLAKSIHHTHVLIRQRHIRVGKQ |
Parental | VVNIPSFIVRLDSQKHIDFSL |
VVNIPSFIVRLDSQKHIDFSL | |
Retrocopy | VVNIPSFIVRLDSQKHIDFSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .56 RPM |
SRP017611_kidney | 0 .14 RPM | 14 .58 RPM |
SRP017611_liver | 0 .00 RPM | 10 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000001130 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000020893 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000027839 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022552 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000010394 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006333 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006314 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010377 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000011449 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011355 | 7 retrocopies |
retro_rnor_1298, retro_rnor_2577, retro_rnor_2849, retro_rnor_2902, retro_rnor_635, retro_rnor_663, retro_rnor_892 ,
|
Rattus norvegicus | ENSRNOG00000049813 | 3 retrocopies |