RetrogeneDB ID: | retro_dnov_1481 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_214058:1501..1937(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIPIN | ||
Ensembl ID: | ENSDNOG00000003177 | ||
Aliases: | None | ||
Description: | TIMELESS interacting protein [Source:HGNC Symbol;Acc:30750] |
Percent Identity: | 91.78 % |
Parental protein coverage: | 91.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DYEHVEDETFPPFPPPASPEREDGE-GAEPDDESGRGAPVPVPPKRTVKRNIPKLDAQRLISERGLPALR |
DYEHVEDET....PPPA.PEREDG..G.EPDDE.GRGAPVPVPPKRTVK.NIPKLDAQRLISERGLPALR | |
Retrocopy | DYEHVEDETTVQGPPPAPPEREDGV>GGEPDDEAGRGAPVPVPPKRTVKMNIPKLDAQRLISERGLPALR |
Parental | HVFDKAKFKGRGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFINRVEYLGNKKEVQTCLKRIRLDLPVLHD |
HVFDKAKFKGR.HEAEDLKTLIRHMEHWAHRLFPKLQFEDFINRVEYLGNKKEV.TCLKRIRLDLPVLHD | |
Retrocopy | HVFDKAKFKGRSHEAEDLKTLIRHMEHWAHRLFPKLQFEDFINRVEYLGNKKEVFTCLKRIRLDLPVLHD |
Parental | DFISNN |
DFISNN | |
Retrocopy | DFISNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 1 .17 RPM | 2 .92 RPM |
SRP012922_cerebellum | 2 .34 RPM | 8 .25 RPM |
SRP012922_heart | 0 .00 RPM | 3 .94 RPM |
SRP012922_kidney | 0 .82 RPM | 1 .10 RPM |
SRP012922_liver | 1 .24 RPM | 2 .17 RPM |
SRP012922_lung | 2 .14 RPM | 5 .96 RPM |
SRP012922_quadricep_muscle | 0 .69 RPM | 1 .38 RPM |
SRP012922_spleen | 2 .17 RPM | 7 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004860 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000003177 | 3 retrocopies |
retro_dnov_1334, retro_dnov_1481 , retro_dnov_410,
|
Homo sapiens | ENSG00000075131 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000061 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000026016 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004386 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000003695 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012909 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007192 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000043068 | 1 retrocopy |