RetrogeneDB ID: | retro_ptro_1145 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 16:57187088..57187747(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIPIN | ||
Ensembl ID: | ENSPTRG00000007192 | ||
Aliases: | None | ||
Description: | TIMELESS interacting protein [Source:HGNC Symbol;Acc:30750] |
Percent Identity: | 86.55 % |
Parental protein coverage: | 73.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MLEPQENGMIDLPDYEHVEDETFPPFPPPASPERQDGEGTEPDEESGN-AAPVPVPPKRTVKRNIPKLDA |
MLEPQENGMIDLPDYEHVEDETFPPFPPP.SPERQD.EG.EPDEESG....PVP..PKRTVKR.IPKLDA | |
Retrocopy | MLEPQENGMIDLPDYEHVEDETFPPFPPPISPERQDVEGAEPDEESGS<QSPVP--PKRTVKRSIPKLDA |
Parental | QRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLGSKKEVQT- |
Q.LISERGLPALRHVFD.AKFKGKGHE.EDLK.LIRHMEHWAHRLFPKLQFEDFIDRVEYLG..KEVQ.. | |
Retrocopy | QILISERGLPALRHVFDNAKFKGKGHESEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVEYLGNEKEVQAC |
Parental | LKRIRLDPPILHEDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASELSRSLTEEQQQRIERNKQL |
LK.IRLD.PIL.EDF.S.NDEV.ENN.HDVT.TELDPFLTN.SESE.FASE.SRSLTEEQQQ.IERNKQL | |
Retrocopy | LKQIRLDLPILPEDFISKNDEVVENNGHDVTATELDPFLTNSSESEIFASESSRSLTEEQQQKIERNKQL |
Parental | ALERRQAKLLSNS |
ALERRQAKLLSNS | |
Retrocopy | ALERRQAKLLSNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1 .29 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .08 RPM |
SRP007412_heart | 0 .00 RPM | 0 .76 RPM |
SRP007412_kidney | 0 .00 RPM | 1 .39 RPM |
SRP007412_liver | 0 .03 RPM | 1 .44 RPM |
SRP007412_testis | 0 .00 RPM | 14 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_1582 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004860 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000003177 | 3 retrocopies | |
Homo sapiens | ENSG00000075131 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000061 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000026016 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004386 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000003695 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012909 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007192 | 2 retrocopies |
retro_ptro_1145 , retro_ptro_3220,
|
Rattus norvegicus | ENSRNOG00000043068 | 1 retrocopy |