RetrogeneDB ID: | retro_mmur_255 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_1996:21759..22412(-) | ||
Located in intron of: | ENSMICG00000009501 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIPIN | ||
Ensembl ID: | ENSMICG00000004386 | ||
Aliases: | None | ||
Description: | TIMELESS interacting protein [Source:HGNC Symbol;Acc:30750] |
Percent Identity: | 67.25 % |
Parental protein coverage: | 74.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | MLEPQENGMI-DLPDYEHTEDETF-PPFPPPASPERQ-DGEGAEPDEVSGNGAPVPVPPKRTVKRNIPKL |
MLEPQENGM..D..D..H.E.ET..PPF.PP....R...GEGA.P.E..G..A..P.PP....KRN.P.L | |
Retrocopy | MLEPQENGMM<DPADCVHGE-ETV<PPF-PPLASLRH>GGEGAGPTEGCGVAAAAPAPPDNS-KRNAPTL |
Parental | DAQRLISERGLP-ALRNLFDKAKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRIEYLGNKKEV |
.......ERGL..ALR.LFDKA.FKGKGHEAEDLK.LIRH.EHWAHRLFPK.QFEDFIDRIEYLGNKKEV | |
Retrocopy | -GRETDAERGLQ<ALRSLFDKANFKGKGHEAEDLKMLIRHREHWAHRLFPKSQFEDFIDRIEYLGNKKEV |
Parental | QTCLKRIRLDLPIVHEDFVSNDDDIGE-NNSHDITTTE-LDPFLTNSSENEKFAFESSRNLTEEQQQRIE |
....K..RLDL.I.HE.FVS.D.D.GE.N.SH....TE..DPFLTNSSE.EKF..ESSR.LTEE.QQRIE | |
Retrocopy | WNSSKQMRLDLAILHENFVSSDNDRGE<NDSHEVRATE<IDPFLTNSSESEKFSSESSRSLTEEPQQRIE |
Parental | RNKQLALERRQAKLLSNSQ |
RNKQL.LERRQ.KLLS.SQ | |
Retrocopy | RNKQLTLERRQVKLLSKSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004860 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000003177 | 3 retrocopies | |
Homo sapiens | ENSG00000075131 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000061 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000026016 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004386 | 2 retrocopies |
retro_mmur_155, retro_mmur_255 ,
|
Macaca mulatta | ENSMMUG00000003695 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012909 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007192 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000043068 | 1 retrocopy |