RetrogeneDB ID: retro_mmur_155

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1501:0..499(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TIPIN
• Ensembl ID: ENSMICG00000004386
• Aliases: None
• Description: TIMELESS interacting protein [Source:HGNC Symbol;Acc:30750]

Sequence

>retro_mmur_155
CACTGGGCACCTAAGCTATTCCCTAAACTGCAATTTGAGGATTTCAGTGACAGAATTGAATACCTGGGAAATAAAAAAGA
AGTTCAGACCTATTTAAAATGAATTCATCTTGATCTCTGTATTTTACATGAAGATTTTATAGCAATGATGATGACGTAGG
GGAAAATAATGGCCATGATGTAACTGCTACTGAATTAGATCGCTTTTTGATAAACTCATCTGAAAGTGAGAAGTTTGCTT
CTGAGTCAAGTAAAAGCCTAACAGAAAAGCAACAACAAAGAATTGAGAGAAATAAACAACTGGCCTTGGAAAGAAGGCAG
GCAAAGCTACTGAATAATAGTCCCTAGGAAATGATGTGTTAACGAACACACCGAGGGCACAGATAGTTGAAGAGCTTCCT
ACTGGTGAGGATCAAAAGGAGGAACCAAATGGACTAAACAAAGACATTCTGGACAGTCCACATAAGGACACTCCTGCTAA
TACTTTAAATGAAGAGGAG

Alignment

ORF - retro_mmur_155 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.82 %
• Parental protein coverage: 56.38 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  HWAHRLFPKLQFEDFIDRIEYLGNKKEVQTCLKRIRLDLPIVHEDFV-SNDDDIGENNSHDITTTELDPF
          HWA..LFPKLQFEDF.DRIEYLGNKKEVQT.LK.I.LDL.I.HEDF..SNDDD.GENN.HD.T.TELD.F
Retrocopy HWAPKLFPKLQFEDFSDRIEYLGNKKEVQTYLK*IHLDLCILHEDFI<SNDDDVGENNGHDVTATELDRF

Parental  LTNSSENEKFAFESSRNLTEEQQQRIERNKQLALERRQAKLLSNSQ-SPGNDMLMNTPKAQIVEEVHTGE
          L.NSSE.EKFA.ESS..LTE.QQQRIERNKQLALERRQAK.L.N...S.GND.L.NTP.AQIVEE..TGE
Retrocopy LINSSESEKFASESSKSLTEKQQQRIERNKQLALERRQAK-LLNNS<SLGNDVLTNTPRAQIVEELPTGE

Parental  DQKEESNGLNKDILDNPHNDVPANTLNEEE
          DQKEE.NGLNKDILD.PH.D.PANTLNEEE
Retrocopy DQKEEPNGLNKDILDSPHKDTPANTLNEEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_155 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_155 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000004860	1 retrocopy	retro_chof_223,
Dasypus novemcinctus	ENSDNOG00000003177	3 retrocopies	retro_dnov_1334, retro_dnov_1481, retro_dnov_410,
Homo sapiens	ENSG00000075131	1 retrocopy	retro_hsap_4837,
Gorilla gorilla	ENSGGOG00000000061	3 retrocopies	retro_ggor_1268, retro_ggor_2907, retro_ggor_3016,
Loxodonta africana	ENSLAFG00000026016	1 retrocopy	retro_lafr_1104,
Microcebus murinus	ENSMICG00000004386	2 retrocopies	retro_mmur_155 , retro_mmur_255,
Macaca mulatta	ENSMMUG00000003695	1 retrocopy	retro_mmul_1582,
Nomascus leucogenys	ENSNLEG00000012909	1 retrocopy	retro_nleu_1336,
Pan troglodytes	ENSPTRG00000007192	2 retrocopies	retro_ptro_1145, retro_ptro_3220,
Rattus norvegicus	ENSRNOG00000043068	1 retrocopy	retro_rnor_364,