RetrogeneDB ID: | retro_dnov_160 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_2223:100608..101062(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SET | ||
Ensembl ID: | ENSDNOG00000002802 | ||
Aliases: | None | ||
Description: | SET nuclear oncogene [Source:HGNC Symbol;Acc:10760] |
Percent Identity: | 64.94 % |
Parental protein coverage: | 52.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KRQSSLLPHSKRAKLLPIPPEETPA-ALDLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYN |
KRQSSLLP..K...L.P.P....P...LDLPK.E.E.QEA.E...E.QN.IDR.NEQASE.I.KV.QK.N | |
Retrocopy | KRQSSLLPPRKKSTLFPPPGQRRPSITLDLPKREREEQEANERTVEGQNKIDRVNEQASE-IFKVGQKCN |
Parental | KLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYL-TRVEVTEFEDIKSGYRIDFYFDE |
KL.QP.FQKRS.LIAKIP...V.T.VN.PQ.SA.LG.E.......L.TR.EV.E.ED.KSGYRIDF.FDE | |
Retrocopy | KLHQPSFQKRSDLIAKIPTLAVRTAVNCPQASAPLG-EEDKEVLPL>TREEVMELEDNKSGYRIDFNFDE |
Parental | NPYFENKVLSKEFH |
N.YFENKVLSKEFH | |
Retrocopy | NSYFENKVLSKEFH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 34 .62 RPM |
SRP012922_cerebellum | 0 .00 RPM | 23 .92 RPM |
SRP012922_heart | 0 .00 RPM | 12 .07 RPM |
SRP012922_kidney | 0 .00 RPM | 24 .64 RPM |
SRP012922_liver | 0 .00 RPM | 14 .86 RPM |
SRP012922_lung | 0 .00 RPM | 31 .16 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 14 .37 RPM |
SRP012922_spleen | 0 .00 RPM | 54 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015686 | 7 retrocopies | |
Bos taurus | ENSBTAG00000020959 | 8 retrocopies | |
Canis familiaris | ENSCAFG00000032728 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000002802 | 3 retrocopies |
retro_dnov_160 , retro_dnov_1830, retro_dnov_464,
|
Felis catus | ENSFCAG00000005848 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014291 | 13 retrocopies | |
Macaca mulatta | ENSMMUG00000008532 | 11 retrocopies | |
Mustela putorius furo | ENSMPUG00000013069 | 10 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017595 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007501 | 12 retrocopies | |
Otolemur garnettii | ENSOGAG00000007635 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019659 | 17 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000010546 | 6 retrocopies |