RetrogeneDB ID: | retro_ocun_421 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 10:19513525..19513983(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000007501 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.89 % |
Parental protein coverage: | 62.25 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MAPKRPSLLLPHAKKPR-AAPGPRPADTSASRGLLTC-EKEQQEAIEHIDEVQNEIDRLNEQASEEILKV |
M..K.PS..LP..KK.R....GPR..DT..S.GL.T..EKEQ.EAIEHID.VQNEIDRLNE.AS.EILKV | |
Retrocopy | MVHKCPSWILPQRKKLR<STSGPRAVDTWVS*GLSTG>EKEQ*EAIEHIDKVQNEIDRLNE*ASMEILKV |
Parental | EQKYNKLRQPFFQKRSELI-AKIPNFWVTTFVNHPQGLVSALLGEEDEEALHYLTRVEVTEFEDIKSGYR |
.Q.YN.L.QPFFQKRSEL..AKIP.F.VT.FV.H.Q..VSALLGEEDEEAL.YLTRVEVTE.EDIKSGYR | |
Retrocopy | GQRYNELLQPFFQKRSELL<AKIPDFCVTAFVSHLQ--VSALLGEEDEEALLYLTRVEVTELEDIKSGYR |
Parental | IDFYFDENPYFENKVLSK |
IDFYFDENPY......S. | |
Retrocopy | IDFYFDENPYSLQRISSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 56 .62 RPM |
SRP017611_kidney | 0 .10 RPM | 50 .78 RPM |
SRP017611_liver | 0 .08 RPM | 22 .04 RPM |