RetrogeneDB ID: | retro_ocun_476 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:49569001..49569632(-) | ||
Located in intron of: | ENSOCUG00000004461 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000007501 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.14 % |
Parental protein coverage: | 85.94 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | ASRGLLTCEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQP-FFQKRSELIAKIPNFWVTT |
.S.GL...E.E.QEAIEHID.VQ.E.DRL.E..S.EILKVEQ.Y.KL.Q..FF.K...L........VT. | |
Retrocopy | SSQGLSKGENE-QEAIEHIDQVQSETDRLTELGSKEILKVEQRYRKLHQLFFFSKEVRLDSQNLQL*VTI |
Parental | FVNHPQGLVSALL-GEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKE-FHLNESGDP |
F..H.Q..VSA.L.G......LHYLTRVE.TE...IKSGYRID.YFDENP.F.N.V.SKE.F.LNESG.P | |
Retrocopy | FIYHLQ--VSAML>GWGRGQTLHYLTRVEATEY--IKSGYRIDLYFDENPCF*NHVFSKE>FFLNESGNP |
Parental | SSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEP-ESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYY |
.SKST..KWKSGKDL...SS.TQNKASRKRQHE.P..SFFTWFTDHSDA.ADEL.EV...DI..N.LQYY | |
Retrocopy | YSKSTGMKWKSGKDLITGSSETQNKASRKRQHEKP<RSFFTWFTDHSDADADELREVTQGDI*QNLLQYY |
Parental | LVPDMDED |
LVPDMD.D | |
Retrocopy | LVPDMDVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .78 RPM |
SRP017611_liver | 0 .00 RPM | 22 .04 RPM |