RetrogeneDB ID: | retro_ocun_1107 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:79169816..79170530(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000007501 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.67 % |
Parental protein coverage: | 96.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | APKRPSLLLPHAKKPRAAPGPRPADTSASRGLLTCEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQK |
.P.RP.........P.A................T.EKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQK | |
Retrocopy | SPLRPRPRSSTMSAPAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQK |
Parental | YNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQGLVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFY |
YNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQ..VSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFY | |
Retrocopy | YNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQ--VSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFY |
Parental | FDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS |
FDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS | |
Retrocopy | FDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS |
Parental | DAGADELGEVIKDDIWPNPLQYYLVPDMDE |
DAGADELGEVIKDDIWPNPLQYYLVPDMD. | |
Retrocopy | DAGADELGEVIKDDIWPNPLQYYLVPDMDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 12 .64 RPM | 56 .62 RPM |
SRP017611_kidney | 14 .39 RPM | 50 .78 RPM |
SRP017611_liver | 5 .86 RPM | 22 .04 RPM |