RetrogeneDB ID: | retro_dnov_2091 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_46701:1844..2202(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FUNDC1 | ||
| Ensembl ID: | ENSDNOG00000014551 | ||
| Aliases: | None | ||
| Description: | FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746] |
Retrocopy-Parental alignment summary:
>retro_dnov_2091
AATCGAGTGTTTGGCCCTAGTTCTGGGACTAAGGCAGAAAACTATTCAGTGGCTACTCAGATTGCAATGGGTGGGGTAAC
TGGCTGGTATGGAAGAGTTTTGTTCCAGGAAGTTGGACAACTTGCAGCAACTGCAGTAGGTGGTAGCTTTCTTCTCCTTC
AGATTTCCAGTCACAGTGACTATATGAAGATTGACTGGAGGAGTTGAAAAAAATGTAAACAAAGCCAAAAGACAGATTAA
GAAATGTGCAAATAAAGCAGCAGCTGAAATCAAGAATATAATTGAAGAAGCAACAGAATTTCTCAAACAGAACATTGTGA
TATCCAGTGGATTTGTGGGAGACTTTTTGTTAGGCCTT
ORF - retro_dnov_2091 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 70.49 % |
| Parental protein coverage: | 82.76 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | NRVFGHSSGPMVEKYSVATQIVMGGVTGWCAGFLFQKVGKLAATAVGGGFLLLQXXXXXXXXXXDWK-RV |
| NRVFG.SSG...E.YSVATQI.MGGVTGW....LFQ.VG.LAATAVGG.FLLLQ..........DW.... | |
| Retrocopy | NRVFGPSSGTKAENYSVATQIAMGGVTGWYGRVLFQEVGQLAATAVGGSFLLLQISSHSDYMKIDWR<EL |
| Parental | KKDVTKAK-RQIKKRANKAAPEINNIIEEATEFIKQNIVISSGFVGGFLLGL |
| KK..TK.K.RQIKK.ANKAA.EI.NIIEEATEF.KQNIVISSGFVG.FLLGL | |
| Retrocopy | KKM*TKPK<RQIKKCANKAAAEIKNIIEEATEFLKQNIVISSGFVGDFLLGL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 5 .83 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 8 .25 RPM |
| SRP012922_heart | 0 .00 RPM | 9 .51 RPM |
| SRP012922_kidney | 0 .00 RPM | 9 .86 RPM |
| SRP012922_liver | 0 .15 RPM | 4 .33 RPM |
| SRP012922_lung | 0 .00 RPM | 6 .41 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 6 .40 RPM |
| SRP012922_spleen | 0 .00 RPM | 10 .87 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2091 was not experimentally validated.