RetrogeneDB ID: | retro_dnov_2091 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_46701:1844..2202(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC1 | ||
Ensembl ID: | ENSDNOG00000014551 | ||
Aliases: | None | ||
Description: | FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746] |
Percent Identity: | 70.49 % |
Parental protein coverage: | 82.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | NRVFGHSSGPMVEKYSVATQIVMGGVTGWCAGFLFQKVGKLAATAVGGGFLLLQXXXXXXXXXXDWK-RV |
NRVFG.SSG...E.YSVATQI.MGGVTGW....LFQ.VG.LAATAVGG.FLLLQ..........DW.... | |
Retrocopy | NRVFGPSSGTKAENYSVATQIAMGGVTGWYGRVLFQEVGQLAATAVGGSFLLLQISSHSDYMKIDWR<EL |
Parental | KKDVTKAK-RQIKKRANKAAPEINNIIEEATEFIKQNIVISSGFVGGFLLGL |
KK..TK.K.RQIKK.ANKAA.EI.NIIEEATEF.KQNIVISSGFVG.FLLGL | |
Retrocopy | KKM*TKPK<RQIKKCANKAAAEIKNIIEEATEFLKQNIVISSGFVGDFLLGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 5 .83 RPM |
SRP012922_cerebellum | 0 .00 RPM | 8 .25 RPM |
SRP012922_heart | 0 .00 RPM | 9 .51 RPM |
SRP012922_kidney | 0 .00 RPM | 9 .86 RPM |
SRP012922_liver | 0 .15 RPM | 4 .33 RPM |
SRP012922_lung | 0 .00 RPM | 6 .41 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 6 .40 RPM |
SRP012922_spleen | 0 .00 RPM | 10 .87 RPM |