RetrogeneDB ID: | retro_fcat_1493 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:74477508..74477960(+) | ||
Located in intron of: | ENSFCAG00000025583 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC1 | ||
Ensembl ID: | ENSFCAG00000005541 | ||
Aliases: | None | ||
Description: | FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746] |
Percent Identity: | 72.08 % |
Parental protein coverage: | 97.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | RNPPPQEYESDDESYEVLDLTDYARRHHWWNRVFGHSSGPMVEKYSVATQIVMGGVTGWCAGFLF-QKVG |
R.PP.Q..ES..ES..V..LT...RRH.WW...FG.SSGPMVE.YSVATQ.V.GG.TG.C.GFLF..KVG | |
Retrocopy | RKPPHQGHESNEESQKVSYLTEFVRRHNWWDQMFGCSSGPMVEEYSVATQVVKGGLTGCCEGFLF>RKVG |
Parental | KLAATAVGGGFLLLQIASHSGYVQIDWKRVE-KDVNKAK-RQIKKRANKAAPEINNIIEEATEFIKQNIV |
KLA.T.VG..FLLL..ASH.GY.Q.DWKRVE.KDVNKAK.RQIKK.ANK.A.EINNIIEEATEF.KQ.IV | |
Retrocopy | KLATTTVGVSFLLL*VASHRGYMQTDWKRVE<KDVNKAK<RQIKKQANKTALEINNIIEEATEFLKQSIV |
Parental | ISSGFVGGFLLGLA |
ISSGFVGGFL.GLA | |
Retrocopy | ISSGFVGGFLPGLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .26 RPM |
SRP017611_liver | 0 .00 RPM | 2 .63 RPM |