RetrogeneDB ID: | retro_fcat_179 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:132738803..132739073(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC1 | ||
Ensembl ID: | ENSFCAG00000005541 | ||
Aliases: | None | ||
Description: | FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746] |
Percent Identity: | 76.09 % |
Parental protein coverage: | 58.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LDLTDYARRHHWWNRVFGHSSGPMVEKYSVATQIVMGGVTGWCA-GFLFQKVGKLAATAVGGGFLLLQIA |
LDLT.YA.RHHWWNRV.GHSSGP.VEKYSVATQ.VMGGVTGW.A.G.L....G.L.ATAVGGGF.LLQIA | |
Retrocopy | LDLTEYAIRHHWWNRVSGHSSGPVVEKYSVATQTVMGGVTGWHA>GVLPRRAGELTATAVGGGFALLQIA |
Parental | SHSGYVQIDWKRV-EKDVNKAK |
.HSG.VQ.DWKR..EKDVN..K | |
Retrocopy | RHSGCVQTDWKRA<EKDVNRVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .26 RPM |
SRP017611_liver | 0 .00 RPM | 2 .63 RPM |