RetrogeneDB ID: | retro_fcat_205 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:216611468..216611878(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC1 | ||
Ensembl ID: | ENSFCAG00000005541 | ||
Aliases: | None | ||
Description: | FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746] |
Percent Identity: | 56.34 % |
Parental protein coverage: | 90.32 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | DDESYEVLDLTDYARRHHWW-NRVFGHSSGPMVEKYSVATQIVMGGVTGWCAGFLFQKVGKLAATAVGGG |
DD.S...LDLT.Y.RRHHW..N.VFGH.SG...EK.....QI.......W.AG..F..VGKL.A.A.... | |
Retrocopy | DDGS*NILDLTEYLRRHHWQ>N*VFGHGSGSVLEKCPIVNQIAR--ADDWYAGIWF*EVGKLGARALASF |
Parental | FLLLQIASHSGYVQIDWKRVEKDVNKAKR-QIKKRANKAAPEINNIIEEATEFIKQNIVISSGFVGGFLL |
F......S.SG.VQI.W.RVEK..NKA.R..IKK...K.APEINN..EEAT.FI..NIVISSGFVGG..L | |
Retrocopy | F--FTFFSGSGCVQINWDRVEKHKNKAIR>MIKK*PSKEAPEINNKSEEATGFIE*NIVISSGFVGGYSL |
Parental | GL |
GL | |
Retrocopy | GL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .26 RPM |
SRP017611_liver | 0 .00 RPM | 2 .63 RPM |