RetrogeneDB ID: | retro_dnov_2100 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_47794:10192..10831(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP2CA | ||
Ensembl ID: | ENSDNOG00000013011 | ||
Aliases: | None | ||
Description: | protein phosphatase 2, catalytic subunit, alpha isozyme [Source:HGNC Symbol;Acc:9299] |
Percent Identity: | 93.43 % |
Parental protein coverage: | 77.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAKVWKYFTDLFDYLPLTALVDGQIFCL |
.TLLVALKVRY.E.ITILRGNHESRQITQVYGFYDECL.KYGNA.VWKYF.DLFDYLPLTALVDGQIFCL | |
Retrocopy | LTLLVALKVRYPEHITILRGNHESRQITQVYGFYDECLQKYGNANVWKYFADLFDYLPLTALVDGQIFCL |
Parental | HGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTL |
H.GLSPS.DTLDHIRALD.LQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQD.SETFNHANGLTL | |
Retrocopy | HSGLSPSTDTLDHIRALDQLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDVSETFNHANGLTL |
Parental | VSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPD |
VSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFL.FD..PRRGEPHVTR.TPD | |
Retrocopy | VSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLRFDLEPRRGEPHVTRSTPD |
Parental | YFL |
YFL | |
Retrocopy | YFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 13 .22 RPM | 76 .62 RPM |
SRP012922_cerebellum | 9 .49 RPM | 115 .89 RPM |
SRP012922_heart | 2 .78 RPM | 23 .20 RPM |
SRP012922_kidney | 6 .84 RPM | 56 .13 RPM |
SRP012922_liver | 2 .01 RPM | 36 .53 RPM |
SRP012922_lung | 11 .45 RPM | 56 .81 RPM |
SRP012922_quadricep_muscle | 6 .92 RPM | 51 .41 RPM |
SRP012922_spleen | 9 .04 RPM | 57 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002653 | 1 retrocopy | |
Bos taurus | ENSBTAG00000000469 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010906 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013011 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000007561 | 2 retrocopies | |
Felis catus | ENSFCAG00000029685 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010169 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005447 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016632 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000016859 | 1 retrocopy |