RetrogeneDB ID: | retro_dnov_2122 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_49452:2153..2761(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000009769 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP2CA | ||
Ensembl ID: | ENSDNOG00000013011 | ||
Aliases: | None | ||
Description: | protein phosphatase 2, catalytic subunit, alpha isozyme [Source:HGNC Symbol;Acc:9299] |
Percent Identity: | 55.88 % |
Parental protein coverage: | 73.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNAKVWKYFTD |
NY.FMGD.VDR.YYS.ET.T.L.AL......RIT.L.GNHESRQITQV.GFYDEC..KYGNA..W.Y.T. | |
Retrocopy | NYIFMGDFVDRDYYSLETFTYLLALTAKWPDRITLLQGNHESRQITQVCGFYDECQTKYGNANAWRYYTK |
Parental | LFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGP-MCDLLWSDPDDRGGWGISPRGAG |
.F..L...AL.D.QI.C.HGGL.....TLD.IR.....QE.PH......DL.WSDP.D...W.ISPRGA. | |
Retrocopy | VFHMLTVAALIDEQILCVHGGLPSDVKTLDQIRTIEWNQEIPHKVT>VFDLVWSDPEDVDTWAISPRGAD |
Parental | YTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQ-AAIMELDD |
..FG......F.H.N.L.L..RAHQLV.EGY....D...VT..SAPNY.Y.CGN..A.IM...D | |
Retrocopy | WLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYGYHCGNN>ASIMVFKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 2 .92 RPM | 76 .62 RPM |
SRP012922_cerebellum | 3 .30 RPM | 115 .89 RPM |
SRP012922_heart | 0 .93 RPM | 23 .20 RPM |
SRP012922_kidney | 2 .19 RPM | 56 .13 RPM |
SRP012922_liver | 1 .08 RPM | 36 .53 RPM |
SRP012922_lung | 5 .35 RPM | 56 .81 RPM |
SRP012922_quadricep_muscle | 2 .08 RPM | 51 .41 RPM |
SRP012922_spleen | 2 .98 RPM | 57 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002653 | 1 retrocopy | |
Bos taurus | ENSBTAG00000000469 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010906 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013011 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000007561 | 2 retrocopies | |
Felis catus | ENSFCAG00000029685 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010169 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005447 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016632 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000016859 | 1 retrocopy |