RetrogeneDB ID: | retro_sara_296 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_153023:4012..4509(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP2CA | ||
Ensembl ID: | ENSSARG00000005447 | ||
Aliases: | None | ||
Description: | protein phosphatase 2, catalytic subunit, alpha isozyme [Source:HGNC Symbol;Acc:9299] |
Percent Identity: | 97.01 % |
Parental protein coverage: | 54.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KYFTDLFDYL-PLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGIS |
KYFTDLFD.L.PLT.LVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGIS | |
Retrocopy | KYFTDLFDDL<PLTSLVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGIS |
Parental | PRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTL |
PR.AGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTI.SAPNYCYRCGNQAAIMELDDTL | |
Retrocopy | PRDAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIISAPNYCYRCGNQAAIMELDDTL |
Parental | KYSFLQFDPAPRRGEPHVTRRTPDYFL |
KYSFLQFDPAPRRGEPHVTRRTPDYFL | |
Retrocopy | KYSFLQFDPAPRRGEPHVTRRTPDYFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002653 | 1 retrocopy | |
Bos taurus | ENSBTAG00000000469 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013011 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000007561 | 2 retrocopies | |
Felis catus | ENSFCAG00000029685 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010169 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005447 | 3 retrocopies |
retro_sara_296 , retro_sara_385, retro_sara_715,
|
Sarcophilus harrisii | ENSSHAG00000016632 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000016859 | 1 retrocopy |