RetrogeneDB ID: | retro_dnov_2266 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_59851:826..1417(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000015893 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.76 % |
Parental protein coverage: | 74.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | HKDRVCQ-QPGLSLWVPFQNAATA-VTNLYKESVDTHQRSFDIGIQIGYQRRNKDVLAWVKRRRTIRRED |
HK.R.C..QPGL.L.VPFQNAATA..TNL.KESVDT.QRSFDIG.QIGYQRR.KD.LAWVK.RRT..RED | |
Retrocopy | HKARACH<QPGLPLRVPFQNAATA<ITNLCKESVDTRQRSFDIGVQIGYQRRSKDMLAWVKKRRTVGRED |
Parental | LISFLCGKAPPPRNSRAP-PRLTVESPN-RATSTETSSSVETDVQPFPETVALHGLSGAMASIARSSPGS |
LISFLCGK.PPP.NSRAP.PR.TV..PN.R.TS.E.SSS.ET...PF.E..ALHGLSGAMASIARSSP.. | |
Retrocopy | LISFLCGKVPPPGNSRAP<PR-TVVPPN<RSTSAEASSSAETGLPPFREAAALHGLSGAMASIARSSPHA |
Parental | -PPRVSSGSNARSRR-SGLHDVDVNTFTSEEMALHLDNGGARKRTSAQWGDV-FTDSTTHKRNRMI |
..P...S......RR.SGLHDVDVNTFTSEE.ALHLDNGGARKRTSAQ.GDV..TDS.THKRNRMI | |
Retrocopy | <SPPRVSSGSNARRRRSGLHDVDVNTFTSEETALHLDNGGARKRTSAQCGDV<LTDSPTHKRNRMI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .78 RPM | 7 .78 RPM |
SRP012922_cerebellum | 0 .27 RPM | 5 .36 RPM |
SRP012922_heart | 0 .23 RPM | 5 .34 RPM |
SRP012922_kidney | 0 .27 RPM | 3 .56 RPM |
SRP012922_liver | 0 .31 RPM | 4 .64 RPM |
SRP012922_lung | 0 .76 RPM | 10 .23 RPM |
SRP012922_quadricep_muscle | 0 .52 RPM | 7 .27 RPM |
SRP012922_spleen | 0 .23 RPM | 8 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010719 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000018981 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010925 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015893 | 3 retrocopies |
retro_dnov_1575, retro_dnov_2266 , retro_dnov_827,
|
Equus caballus | ENSECAG00000009430 | 1 retrocopy | |
Homo sapiens | ENSG00000182831 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010744 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005378 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000014707 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022507 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010106 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003909 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007088 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007751 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002545 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000028454 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009324 | 1 retrocopy |