RetrogeneDB ID: | retro_itri_137 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393323.1:7551396..7552227(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000027606 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C16orf72 | ||
Ensembl ID: | ENSSTOG00000009324 | ||
Aliases: | None | ||
Description: | chromosome 16 open reading frame 72 [Source:HGNC Symbol;Acc:30103] |
Percent Identity: | 68.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFDIGIQIGYQRRNKDVLAWVKKRRRTIRREDLIS |
D..CQQPGLS.W.PFQNAA.AVT.LYKES.D.HQRSFD.G.Q.GYQRR.KDVL.WVKK.R.TIRREDLIS | |
Retrocopy | DSGCQQPGLSMWDPFQNAAMAVTSLYKESGDAHQRSFDLGVQVGYQRRIKDVLEWVKKGRSTIRREDLIS |
Parental | FLCGKV----PPPRNSRAPPRLTVVSPNRATSTETSSSVETDLQPFREAIALHGLSGAMASISVRSSTPG |
FLCGKV....PPPR.SR.PP.........A..TE.SSSV..DLQPF.EAIALHGL.GAMASISVRS..PG | |
Retrocopy | FLCGKVPPAPPPPRTSRMPPKPPSGAASQAGATESSSSVDVDLQPFHEAIALHGLNGAMASISVRSGAPG |
Parental | SPTHVSSGSNASRRRNGLHDVDLNTFISEEMALHLDNGGTRKRTSAQCGDVITDSPTHKRNRMI |
SP...S......RR.......DLN.F.SEE.AL.LD.GG.RKRTSAQ.GD.ITDSP.HKRNRM. | |
Retrocopy | SPPQDSGVASSGRRKSSFLEDDLNPFGSEELALCLDSGGIRKRTSAQFGDGITDSPSHKRNRMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010719 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000018981 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010925 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015893 | 3 retrocopies | |
Equus caballus | ENSECAG00000009430 | 1 retrocopy | |
Homo sapiens | ENSG00000182831 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010744 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005378 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000014707 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022507 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010106 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003909 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007088 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007751 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002545 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000028454 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009324 | 1 retrocopy |
retro_itri_137 ,
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