RetrogeneDB ID: | retro_cpor_101 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_79:2109354..2110194(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000025329 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C16ORF72 | ||
Ensembl ID: | ENSCPOG00000010925 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FQNSATAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYKESVD-THQRSFDIGIQIGYQRRNKDVLAWV |
FQ..A.AVAQLY.D..CQQP..S.W.PFQ.AA.AVT.LYKES.D....R..D.G.Q.G..RR..DVL.W. | |
Retrocopy | FQLAANAVAQLYQDSECQQPEQSVWDPFQRAAMAVTDLYKESGDDARRRCLDLGVQVGCRRRVGDVLEWA |
Parental | KKRRRTIRREDLISFLCGKV----PPPRNSRAPPRLTVVSPNRATSAETSSSVETDLQPFREAIALHGLS |
KK.R.TIRREDLISFLCGK.....PPPR..R.PP.........A...E...SV..DLQ.F.EA.ALHGL. | |
Retrocopy | KKGRSTIRREDLISFLCGKAPPEAPPPRAPRTPPKPPAGAAGQAAVTESNPSVDVDLQLFHEAAALHGLD |
Parental | GAMASISVRSSTPGSPTHVSSGSNASRRRNGLHDVDLNTFISEEMALHLDNGGTRKRTSAQCGDVITDSP |
GA.AS..V....PGSP...S......R........DLN.F.SEE..LHLD.GG.RKR.S.Q.GD..TDSP | |
Retrocopy | GAAASVGVPTGAPGSPPQGSGVACGGRTQSSFLEDDLNRFGSEELGLHLDSGGIRKRPSTQLGDCFTDSP |
Parental | THKRNRMI |
.HKRNRM. | |
Retrocopy | SHKRNRMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .55 RPM |
SRP017611_liver | 0 .00 RPM | 10 .84 RPM |
SRP040447_lung | 0 .00 RPM | 20 .33 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 19 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010719 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000018981 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010925 | 1 retrocopy |
retro_cpor_101 ,
|
Dasypus novemcinctus | ENSDNOG00000015893 | 3 retrocopies | |
Equus caballus | ENSECAG00000009430 | 1 retrocopy | |
Homo sapiens | ENSG00000182831 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010744 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005378 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000014707 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022507 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010106 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003909 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007088 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007751 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002545 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000028454 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009324 | 1 retrocopy |