Parental gene:

C16orf72, ENSCAFG00000018981

Aliases:None
Description:chromosome 16 open reading frame 72 [Source:HGNC Symbol;Acc:30103]
Organism:Dog (Canis familiaris)
Coordinates:6:33127811..33151451(-)


>ENSCAFG00000018981
ATGGCGAAACCTAATATGGCCGTTCCGGAGTCCCTGACGCGAGTAACATCTCCGTCTCTCTGTCTCTCTGTGTGTGTCTT
CTGTGTTTTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGGCCTCCCCCCGCTCTTTCAGACCGAGTGTGTCAGCAGC
CAGGACTTTCTCTCTGGGTCCCCTTCCAAAACGCGGCCACCGCCGTCACCAACCTCTACAAAGAAAGCGTGGATACTCAT
CAGCGAAGTTTTGATATTGGAATTCAGATTGGCTATCAGCGACGCAATAAGGATGTGTTGGCTTGGGTTAAAAAGCGCAG
AAGAACTATTCGTAGAGAAGATTTGATCAGCTTCCTGTGTGGAAAAGTTCCTCCACCACGAAACTCTAGAGCTCCCCCAA
GACTGACTGTAGTGTCCCCTAACCGAGCTACTTCAACGGAAACTAGCTCATCTGTAGAGACTGATTTGCAACCCTTCCGG
GAAGCCATAGCTCTGCATGGTCTTAGTGGTGCAATGGCTAGTATAAGCGTGCGTTCGAGTACCCCAGGCTCTCCTACACA
TGTAAGCAGTGGATCGAATGCTAGTCGAAGGAGAAATGGACTCCATGATGTCGATTTGAACACTTTCATATCAGAAGAAA
TGGCACTCCACTTGGACAATGGTGGAACTAGAAAGCGTACCTCAGCCCAGTGTGGCGATGTCATTACAGACTCACCAACC
CATAAACGCAACAGAATGATCTAA

Library Parental gene expression (RPM)
SRP017611_brain 26 .68 RPM
SRP017611_kidney 16 .11 RPM
SRP017611_liver 10 .01 RPM
SRP012049_cerebellum 27 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010719 ortholog_one2one 2 retrogenes
retro_amel_1715, retro_amel_88,
Cavia porcellus ENSCPOG00000010925 ortholog_one2one 1 retrogene
retro_cpor_101,
Dasypus novemcinctus ENSDNOG00000015893 ortholog_one2many 3 retrogenes
retro_dnov_1575, retro_dnov_2266, retro_dnov_827,
Equus caballus ENSECAG00000009430 ortholog_one2one 1 retrogene
retro_ecab_1091,
Homo sapiens ENSG00000182831 ortholog_one2one 1 retrogene
retro_hsap_4765,
Gorilla gorilla ENSGGOG00000010744 ortholog_one2one 1 retrogene
retro_ggor_2968,
Monodelphis domestica ENSMODG00000005378 ortholog_one2one 2 retrogenes
retro_mdom_1716, retro_mdom_299,
Mustela putorius furo ENSMPUG00000014707 ortholog_one2one 1 retrogene
retro_mputfur_44,
Mus musculus ENSMUSG00000022507 ortholog_one2one 1 retrogene
retro_mmus_3460,
Nomascus leucogenys ENSNLEG00000010106 ortholog_one2one 1 retrogene
retro_nleu_2348,
Otolemur garnettii ENSOGAG00000003909 ortholog_one2one 1 retrogene
retro_ogar_74,
Pongo abelii ENSPPYG00000007088 ortholog_one2one 1 retrogene
retro_pabe_163,
Pan troglodytes ENSPTRG00000007751 ortholog_one2one 1 retrogene
retro_ptro_3172,
Rattus norvegicus ENSRNOG00000002545 ortholog_one2one 2 retrogenes
retro_rnor_156, retro_rnor_1928,
Sus scrofa ENSSSCG00000028454 ortholog_one2many 1 retrogene
retro_sscr_1177,
Ictidomys tridecemlineatus ENSSTOG00000009324 ortholog_one2one 1 retrogene
retro_itri_137,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_147 61.54 80.97
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Download FASTA sequences of all ENSCAFG00000018981 retrocopies