RetrogeneDB ID: | retro_ggor_2968 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:137763843..137764554(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C16ORF72 | ||
Ensembl ID: | ENSGGOG00000010744 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.25 % |
Parental protein coverage: | 85.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ELQEEAAAA-AQPEHKQQKLWHLFQNSATAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQ |
ELQEEAAA..A......QKLWHLFQ.SATAVAQLYKD..CQQ.GLS.W.PFQNAA.AVT.LYKES.D.HQ | |
Retrocopy | ELQEEAAAELAGLKSEKQKLWHLFQISATAVAQLYKDSGCQQQGLSMWDPFQNAAMAVTSLYKESGDAHQ |
Parental | RSFDIGIQIGYQRRNKDVLAWVKKRRRTIRREDLISFLCGKVPP----PRNSRAPPRLTVVSPNRATSTE |
RSFD.G.Q.G.QRR.KDVL.WVKK.R.TIRREDLISFLCGKVPP....PR..R.PP.........A..TE | |
Retrocopy | RSFDLGVQVGHQRRIKDVLEWVKKGRSTIRREDLISFLCGKVPPAPPPPRTPRTPPKPPTGVTSQAVATE |
Parental | TSSSVETDLQPFREAIALHGLSGAMASISVRSSTPGSPTHVSSGSNASRRRNGLHDVDLNTFISEEMALH |
.SSSV..DLQPF.EAIALHGLSGAMA.IS.RS...G.....S......RR.......DLN.F.SEE.ALH | |
Retrocopy | SSSSVDVDLQPFQEAIALHGLSGAMAGISMRS---GDSPQDSGVASSGRRKSSFLEDDLNPFDSEELALH |
Parental | LDNGGTRKRTSAQCGDVITDSPTHKRNRMI |
LD.GG.RKRTSAQC.D.ITDSP..KRNRM. | |
Retrocopy | LDSGGVRKRTSAQCSDGITDSPIQKRNRMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .34 RPM | 19 .85 RPM |
SRP007412_cerebellum | 1 .06 RPM | 18 .48 RPM |
SRP007412_heart | 0 .00 RPM | 8 .22 RPM |
SRP007412_kidney | 0 .00 RPM | 31 .20 RPM |
SRP007412_liver | 0 .11 RPM | 29 .73 RPM |
SRP007412_testis | 1 .14 RPM | 68 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010719 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000018981 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010925 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015893 | 3 retrocopies | |
Equus caballus | ENSECAG00000009430 | 1 retrocopy | |
Homo sapiens | ENSG00000182831 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010744 | 1 retrocopy |
retro_ggor_2968 ,
|
Monodelphis domestica | ENSMODG00000005378 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000014707 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022507 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010106 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003909 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007088 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007751 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002545 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000028454 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009324 | 1 retrocopy |