RetrogeneDB ID: | retro_dnov_382 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_425:915659..916043(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSDNOG00000013166 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 82.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MAPVKKLVVKGGK-KKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSK |
M.P.KKLVVKGGK.KKKQVLKFTLDCTHPVEDGIMDAANFE.FLQE.IK.NG.AG.LGGGVVTIERSK.K | |
Retrocopy | MVPMKKLVVKGGK<KKKQVLKFTLDCTHPVEDGIMDAANFEPFLQESIKINGNAGDLGGGVVTIERSKRK |
Parental | ITVTSEVPF-SKRYLKYLT-KKYLKKNNLRDWLRVVANSKESYELR-YFQINQDEEEEEDED |
ITVTSEV.F.SKRYL.YLT.KKYL.KNNL.D.L..VAN.KES.EL..YFQINQDEE.EEDED | |
Retrocopy | ITVTSEVAF<SKRYLRYLT>KKYLEKNNLCDRLHMVANNKESCELL>YFQINQDEEKEEDED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 311 .54 RPM |
SRP012922_cerebellum | 0 .14 RPM | 151 .90 RPM |
SRP012922_heart | 0 .00 RPM | 226 .69 RPM |
SRP012922_kidney | 0 .00 RPM | 400 .29 RPM |
SRP012922_liver | 0 .00 RPM | 174 .31 RPM |
SRP012922_lung | 0 .00 RPM | 514 .83 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 384 .25 RPM |
SRP012922_spleen | 0 .00 RPM | 648 .65 RPM |