RetrogeneDB ID: | retro_fcat_1656 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:53788746..53789085(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSFCAG00000006320 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 78.45 % |
Parental protein coverage: | 90.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KKQVLKFTLDCTHPVEDGIMDAANFEQFLQ-ERIKVNGKAGNLGGGVVTIERSKSKITV-TSEVPFSKRY |
K.Q.LKFTLDCTHPVEDG.MDAANFEQFLQ...I.VNGKAGNL.GG.VT.ER.KSKITV.TSEVPFSKRY | |
Retrocopy | KNQLLKFTLDCTHPVEDGLMDAANFEQFLQ<KSIQVNGKAGNLHGGAVTTERGKSKITV>TSEVPFSKRY |
Parental | LKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED |
LK.LTK.Y..K.N..DWL.VVANSKE.YEL.YFQI.QD.EEEED.D | |
Retrocopy | LKFLTKTYV-KDNPHDWLCVVANSKEGYELHYFQITQDAEEEEDND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 37 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 154 .69 RPM |
SRP017611_liver | 0 .00 RPM | 78 .95 RPM |