RetrogeneDB ID:

retro_ttru_147

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1372:66296..66648(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL22
Ensembl ID:ENSTTRG00000010488
Aliases:None
Description:ribosomal protein L22 [Source:HGNC Symbol;Acc:10315]


Retrocopy-Parental alignment summary:






>retro_ttru_147
AAAGACAAGAAGCCTAAGAAGTCAACATGGAAGTTTAATTTGGACCTTACTCATCCAGTAGAAGATGGAATTTTTAATTC
TGGAAATTTTGAACAGTGTCTACGGGAGAAGGTTAAAGTGAATGGAAAAACTGGAAATCTTGGGAATGTCGTTCACATTG
AACGCTTCAAGAATAAAGTCAGTTGTTTCTGAGAAACAGTTCTCTAAAAGGTATTTGAAATACCTTACCAAGAAGTACCT
TAAAAAGAAAAATCTTCGTGATTGTCTTCGTGTGGTTGCATCTGACAAGGAGATTTACGAACTTCATTACTTCCAAATTA
GTCAAGATGAAGATGTATCCGAGTCTGAGGAC

ORF - retro_ttru_147 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.5 %
Parental protein coverage: 92.97 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIER-SKSKITVTSEVPF
K..K.KK...KF.LD.THPVEDGI....NFEQ.L.E..KVNGK.GNLG..VV.IER.S..K..V.SE..F
RetrocopyKDKKPKKSTWKFNLDLTHPVEDGIFNSGNFEQCLREKVKVNGKTGNLGN-VVHIER>SRIK-SVVSEKQF
ParentalSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED
SKRYLKYLTKKYLKK.NLRD.LRVVA..KE.YEL.YFQI.QDE...E.ED
RetrocopySKRYLKYLTKKYLKKKNLRDCLRVVASDKEIYELHYFQISQDEDVSESED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_147 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_147 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 186 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000098647 retrocopies
Bos taurus ENSBTAG000000144234 retrocopies
Choloepus hoffmanni ENSCHOG000000074772 retrocopies
Callithrix jacchus ENSCJAG0000000013212 retrocopies
Dasypus novemcinctus ENSDNOG000000131668 retrocopies
Felis catus ENSFCAG000000063203 retrocopies
Homo sapiens ENSG0000011625116 retrocopies
Gorilla gorilla ENSGGOG0000002773910 retrocopies
Loxodonta africana ENSLAFG000000063525 retrocopies
Macaca mulatta ENSMMUG0000001834712 retrocopies
Mustela putorius furoENSMPUG000000070876 retrocopies
Mus musculus ENSMUSG000000289365 retrocopies
Nomascus leucogenys ENSNLEG0000001033710 retrocopies
Otolemur garnettii ENSOGAG000000147767 retrocopies
Pongo abelii ENSPPYG0000000195111 retrocopies
Pan troglodytes ENSPTRG0000000007614 retrocopies
Rattus norvegicus ENSRNOG000000111045 retrocopies
Sus scrofa ENSSSCG000000033674 retrocopies
Tupaia belangeri ENSTBEG0000000917233 retrocopies
Tursiops truncatus ENSTTRG000000070353 retrocopies
Tursiops truncatus ENSTTRG00000010488 8 retrocopies
Vicugna pacos ENSVPAG000000094661 retrocopy



Copyright © RetrogeneDB 2014-2017