RetrogeneDB ID: | retro_dnov_2381 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_6913:47297..47689(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STMN2 | ||
Ensembl ID: | ENSDNOG00000003373 | ||
Aliases: | None | ||
Description: | stathmin-like 2 [Source:HGNC Symbol;Acc:10577] |
Percent Identity: | 61.48 % |
Parental protein coverage: | 74.86 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | DMEVKQINKRASGQAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAE |
D..VK....R.SGQAFELI..P.S..S..P.....P.KK.LSLEEIQKKLE.A.ER.K..EA.VLKQLAE | |
Retrocopy | DIHVKELEERTSGQAFELIINPRSKES-IPE*PLFPTKKNLSLEEIQKKLEVAGERCKPHEAEVLKQLAE |
Parental | KREHEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANL-AAIIERLQEKERHAAEVRRNKE |
K.EHE.EVLQKA.EENNNFSK..EEKL...ME...EN.EA...AA..E.L.EK.....EVR.NKE | |
Retrocopy | KQEHENEVLQKAIEENNNFSKIVEEKLTHQME--TEN*EAQM<AAKLECLREKNNYIEEVRKNKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 26 .06 RPM |
SRP012922_cerebellum | 0 .00 RPM | 399 .90 RPM |
SRP012922_heart | 0 .00 RPM | 0 .93 RPM |
SRP012922_kidney | 0 .00 RPM | 1 .10 RPM |
SRP012922_liver | 0 .00 RPM | 28 .17 RPM |
SRP012922_lung | 0 .00 RPM | 15 .73 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .52 RPM |
SRP012922_spleen | 0 .11 RPM | 88 .82 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003373 | 3 retrocopies |
retro_dnov_2381 , retro_dnov_545, retro_dnov_831,
|
Dasypus novemcinctus | ENSDNOG00000003756 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001863 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027869 | 2 retrocopies | |
Oryzias latipes | ENSORLG00000008251 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010989 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025094 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000014759 | 1 retrocopy |