RetrogeneDB ID: | retro_dnov_831 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_112176:3090..3491(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000002349 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STMN2 | ||
Ensembl ID: | ENSDNOG00000003373 | ||
Aliases: | None | ||
Description: | stathmin-like 2 [Source:HGNC Symbol;Acc:10577] |
Percent Identity: | 74.07 % |
Parental protein coverage: | 74.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DMEVKQINKRASGQAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAE |
D..VK...KRASGQAFELIL.P.S..S.....L..PKKKDLSLEEIQKKLEAAEERRKS.EA.VLKQLAE | |
Retrocopy | DIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAE |
Parental | KREHEREVLQKALEENNNFSKMAEEKLILKMEQIK-ENREANLAAIIERLQEKERHAAEVRRNKE |
KREHE.EVLQKA.EENNNFSKMAEEKL..KME..K.ENREA..AA..ERL.EK..H..EVR.NKE | |
Retrocopy | KREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANK<ENREAQMAAKLERLREKDKHIEEVRKNKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 79 .93 RPM | 26 .06 RPM |
SRP012922_cerebellum | 124 .55 RPM | 399 .90 RPM |
SRP012922_heart | 11 .14 RPM | 0 .93 RPM |
SRP012922_kidney | 32 .03 RPM | 1 .10 RPM |
SRP012922_liver | 10 .22 RPM | 28 .17 RPM |
SRP012922_lung | 39 .10 RPM | 15 .73 RPM |
SRP012922_quadricep_muscle | 2 .94 RPM | 0 .52 RPM |
SRP012922_spleen | 54 .14 RPM | 88 .82 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003373 | 3 retrocopies |
retro_dnov_2381, retro_dnov_545, retro_dnov_831 ,
|
Dasypus novemcinctus | ENSDNOG00000003756 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001863 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027869 | 2 retrocopies | |
Oryzias latipes | ENSORLG00000008251 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010989 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025094 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000014759 | 1 retrocopy |