RetrogeneDB ID: | retro_dord_278 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_7:155150..156025(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDORG00000016474 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.4 % |
Parental protein coverage: | 64.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MATMAAATLLRATPRLSGLRASPTPWPHGLLRPLRTPAWPLLCRGLAVEAKKAYVRDKPHVNVGTIGHVD |
MATMAAATLLRA.PR.SGL.ASPTP..HGLL.PLRTPA..LLCRGLAVEAKKAY..DKPHVN.GTIGHVD | |
Retrocopy | MATMAAATLLRAMPRYSGLCASPTPLLHGLLQPLRTPALLLLCRGLAVEAKKAYG*DKPHVNMGTIGHVD |
Parental | HGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTATRHYAHTDCPGHADYVKNM |
HGKTTLTA.ITKILAE..GAKFKKYEEIDNAP.ERA.GITINAAHVEYS.ATRHYAHTDCPGHADYVKNM | |
Retrocopy | HGKTTLTAPITKILAEADGAKFKKYEEIDNAPGERAQGITINAAHVEYSSATRHYAHTDCPGHADYVKNM |
Parental | ITGTAPLDGCILVVAANDGPMPQTREHLLLAKQIGVEHIVVYVNKADAVQDSEMVELVELEIRELLTEFG |
ITGTAPLDG..LVVAANDGPMPQ.REH.LLAKQIGVEHIVVYVNKADAVQD..MVELV.LEIRELLTEF. | |
Retrocopy | ITGTAPLDGSVLVVAANDGPMPQPREHFLLAKQIGVEHIVVYVNKADAVQDFLMVELVKLEIRELLTEFV |
Parental | YKGEETPVIVGSALCALEQRDPELGV-KSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVT |
YKGEETPVIVGSALCALE.RDPE.GV..SVQKLLDA..TYIPVPT.DLEKPFLLPVESVYSIPG.GTVVT | |
Retrocopy | YKGEETPVIVGSALCALELRDPERGV<ESVQKLLDAMNTYIPVPTWDLEKPFLLPVESVYSIPGQGTVVT |
Parental | GTLERGILKKGDE |
GTLE.GILKKGDE | |
Retrocopy | GTLEHGILKKGDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000016474 | 1 retrocopy |
retro_dord_278 ,
|
Homo sapiens | ENSG00000178952 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011131 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015564 | 1 retrocopy | |
Mus musculus | ENSMUSG00000073838 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000013114 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002683 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007939 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018604 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009541 | 1 retrocopy | |
Drosophila melanogaster | FBgn0033184 | 1 retrocopy |