RetrogeneDB ID: | retro_hsap_1816 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 17:25410080..25411073(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000265646 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUFM | ||
Ensembl ID: | ENSG00000178952 | ||
Aliases: | TUFM, COXPD4, EF-TuMT, EFTU, P43 | ||
Description: | Tu translation elongation factor, mitochondrial [Source:HGNC Symbol;Acc:12420] |
Percent Identity: | 84.13 % |
Parental protein coverage: | 72.75 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MTTMAAATLLRATPHFSGLAAGRTFLLQGLLRLLKAPALPLLCRGLAVEAKKT-YVRDKPHVNVGTIGHV |
MTTMAAATLLRATPHFSGLAAGRTFLLQGLL.LLKA.ALPLLC.GLAV.AKKT..V..KPHVNVGTIGHV | |
Retrocopy | MTTMAAATLLRATPHFSGLAAGRTFLLQGLLLLLKALALPLLCHGLAVGAKKT>NVCEKPHVNVGTIGHV |
Parental | DHGKTTLTAAITKILAEGGGAKFKKYEEIDNAP-EERARGITINAAHVEYSTAARHYAHTDCPGHADYVK |
DHGKT.L.AAITKILAEGGGAKFKKY.EIDNAP.EE.A.GITI..AHVEYST.A.HYAHTD.PGHADYVK | |
Retrocopy | DHGKTKLIAAITKILAEGGGAKFKKYKEIDNAP>EEQAPGITISVAHVEYSTVAHHYAHTDSPGHADYVK |
Parental | NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE |
.MITGT.PLDGC.LVVAAND.PMP.TREHLLLA..IGVEHVVVYVNKADAVQDSEMVELVELEI.EL.TE | |
Retrocopy | YMITGTTPLDGCLLVVAANDSPMP*TREHLLLAK*IGVEHVVVYVNKADAVQDSEMVELVELEIQELFTE |
Parental | FGY-KGEETPVIVGSALCALEGRDPELGLKSVQKLLDAVDTYIPVPARDLEKPFLLPVEAVYSVPGRGTV |
FGY.KG...P......L.ALEGRDPELGLKSVQKLLDAVDTYIPVPARDLEKPFLL.VEAVYS..G.GT. | |
Retrocopy | FGY>KGRR-PQSL*ALLSALEGRDPELGLKSVQKLLDAVDTYIPVPARDLEKPFLLTVEAVYSMSGHGTM |
Parental | VTGTLERGILKKGDECELLGHSKNIRTVVTGIEMFHKSLERAEAGDNLGALVRG |
VTG.LE..ILKKGD..ELLGH.KNI.TV.TGIEMFHKSLERAEAGDNL.ALVRG | |
Retrocopy | VTGMLEHDILKKGDKRELLGHNKNICTVLTGIEMFHKSLERAEAGDNLRALVRG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 83 .55 RPM |
bodymap2_adrenal | 0 .00 RPM | 103 .39 RPM |
bodymap2_brain | 0 .00 RPM | 60 .15 RPM |
bodymap2_breast | 0 .00 RPM | 83 .15 RPM |
bodymap2_colon | 0 .00 RPM | 77 .96 RPM |
bodymap2_heart | 0 .00 RPM | 99 .45 RPM |
bodymap2_kidney | 0 .00 RPM | 134 .92 RPM |
bodymap2_liver | 0 .00 RPM | 115 .31 RPM |
bodymap2_lung | 0 .00 RPM | 82 .98 RPM |
bodymap2_lymph_node | 0 .00 RPM | 93 .27 RPM |
bodymap2_ovary | 0 .00 RPM | 86 .21 RPM |
bodymap2_prostate | 0 .00 RPM | 85 .70 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 130 .04 RPM |
bodymap2_testis | 0 .00 RPM | 122 .47 RPM |
bodymap2_thyroid | 0 .00 RPM | 110 .54 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 85 .96 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CMI | POLR2A | 17:25407977..25412362 |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1174 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000016474 | 1 retrocopy | |
Homo sapiens | ENSG00000178952 | 1 retrocopy |
retro_hsap_1816 ,
|
Macropus eugenii | ENSMEUG00000011131 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015564 | 1 retrocopy | |
Mus musculus | ENSMUSG00000073838 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000013114 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002683 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007939 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018604 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009541 | 1 retrocopy | |
Drosophila melanogaster | FBgn0033184 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .07 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |