RetrogeneDB ID: | retro_rnor_1134 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 15:10205554..10206438(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tufm | ||
Ensembl ID: | ENSRNOG00000018604 | ||
Aliases: | None | ||
Description: | Elongation factor Tu, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P85834] |
Percent Identity: | 80.54 % |
Parental protein coverage: | 65.27 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | MAAATLLRATPRFSGLCASPTPFLQGRLRPLKA-PASPFLCR-GLAVEAKKTYVRDKPHVNVGTIGHVDH |
MAAA.LLRATP..S.L.AS.T.FL...L.PLKA...SPFLC...LAVEAKKTYV.DKP.VNVGT.GHVDH | |
Retrocopy | MAAAPLLRATPCYSDL*ASRTTFL*SQLWPLKA<LVSPFLCH>ALAVEAKKTYV*DKPYVNVGTNGHVDH |
Parental | GKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMI |
GKTTLT.AI.KIL.EGGGAKFKKY...DN.PEE.ARGITIN.AHVE.STAARHYAHTDCPG.ADYVKNMI | |
Retrocopy | GKTTLTMAIRKILSEGGGAKFKKYK*LDNVPEE*ARGITINTAHVENSTAARHYAHTDCPGLADYVKNMI |
Parental | TGTAPLDGCILVVAANDGPMPQTREHLLLAKQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY |
T.TAPL.GCILVVAA.D.PMPQTREHLLLAKQI.VEHVVVYVNKA...QD.EM.ELV.LEI.ELL...GY | |
Retrocopy | TATAPLEGCILVVAAKDSPMPQTREHLLLAKQIRVEHVVVYVNKAETDQDLEMMELVDLEIWELLSQLGY |
Parental | KGEETPVIVGSALCALEQRDPELGVKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGT |
KGEETPVIVGSALCALEQ.DPELGVKSVQKLLDAVDTYIPVPTR.LEKPFLLPV..VYSIPG..T.VTGT | |
Retrocopy | KGEETPVIVGSALCALEQCDPELGVKSVQKLLDAVDTYIPVPTRYLEKPFLLPVQAVYSIPGLSTMVTGT |
Parental | LERGI-LKKGDECELLGH |
LE.GI.L.KG.E.ELLGH | |
Retrocopy | LEHGI<LEKGNERELLGH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 45 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 125 .47 RPM |
SRP017611_liver | 0 .00 RPM | 70 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000016474 | 1 retrocopy | |
Homo sapiens | ENSG00000178952 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011131 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015564 | 1 retrocopy | |
Mus musculus | ENSMUSG00000073838 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000013114 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002683 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007939 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018604 | 1 retrocopy |
retro_rnor_1134 ,
|
Vicugna pacos | ENSVPAG00000009541 | 1 retrocopy | |
Drosophila melanogaster | FBgn0033184 | 1 retrocopy |