RetrogeneDB ID: | retro_vpac_346 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_109251:5..731(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUFM | ||
Ensembl ID: | ENSVPAG00000009541 | ||
Aliases: | None | ||
Description: | Tu translation elongation factor, mitochondrial [Source:HGNC Symbol;Acc:12420] |
Percent Identity: | 57.38 % |
Parental protein coverage: | 88.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | HVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLAKQIGLEHV-VYVN |
HVEY.T..RHYAH.DCPGH.DY.KNMI.G.A..DG.ILVV.A.DGPMPQTREH.LLAKQ.G.....V..N | |
Retrocopy | HVEYETETRHYAHVDCPGHSDYIKNMIIGAAQVDGAILVVSATDGPMPQTREHILLAKQVGVQRIIVFLN |
Parental | KADAVQNSE-IELVELEIRELLTE-GYKGEETPVIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT |
K.D.V...E...LVE.E..ELL......G..TPVI.GSAL.ALE..DP....K..Q.LL...DTY.PVPT | |
Retrocopy | KCDVVTDPEMLDLVEMEVKELLSSYDFDGDNTPVIRGSALKALEG-DPAFEAK-IQELLNQLDTYVPVPT |
Parental | RDLEKPFLLPIESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLERAEAGDN |
R...KPFLL.IE.V..I.GRGTVVTG..ERG.LK.G.E.E..G.......VVTGIEMF.K.LE....GDN | |
Retrocopy | REIDKPFLLSIEDVLTITGRGTVVTGRCERGQLKVGEEVEIVGIKETTKAVVTGIEMFRKPLEEVLPGDN |
Parental | LGALVRGLKREDLRRGLVMAKPGSIQPHQNVEAQ |
.G.L.RG.......RG.V.AKP.SI.PH....A. | |
Retrocopy | AGILLRGIEKDAVTRGQVLAKPKSITPHSKFKAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000016474 | 1 retrocopy | |
Homo sapiens | ENSG00000178952 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011131 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015564 | 1 retrocopy | |
Mus musculus | ENSMUSG00000073838 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000013114 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002683 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007939 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018604 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009541 | 1 retrocopy |
retro_vpac_346 ,
|
Drosophila melanogaster | FBgn0033184 | 1 retrocopy |