RetrogeneDB ID: | retro_dord_722 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_6293:54864..55352(+) | ||
Located in intron of: | ENSDORG00000004377 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fhl1 | ||
Ensembl ID: | ENSDORG00000015644 | ||
Aliases: | None | ||
Description: | four and a half LIM domains 1 [Source:MGI Symbol;Acc:MGI:1298387] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 50.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | KCFDKFCANTCVECRKPIGA-DSKEVHYKNRFWHDSCFRCAKCFHPLANETFVAKDNKILCNKCATRG-E |
KCF.KFCA..CVECRKPIG..DSKEVHYK..FWHDSCFRCAKCF.PLA.ETFVAKD...LCN.CATRG.E | |
Retrocopy | KCFGKFCACACVECRKPIGQ<DSKEVHYKICFWHDSCFRCAKCFRPLASETFVAKDSNNLCNNCATRG<E |
Parental | DNPRCKGCFK-ALVAGDQNVEYKGLVWHKDCFTCSNCKQVIG-TGSFFPKGEDFYCVTCHETKFAKHCVK |
DNPRCKGCFK.ALVAGDQNVE.KGL.WHKDCFTCS.CKQ..G.TGSFFP.GEDFYCVTCHETK.AKHCVK | |
Retrocopy | DNPRCKGCFK<ALVAGDQNVEHKGLMWHKDCFTCSSCKQGMG<TGSFFPRGEDFYCVTCHETKLAKHCVK |
Parental | CNKAITSGGITYQDQPWHADCFVCVTCS |
C.KAIT.GGITYQDQPWHADC.V..TCS | |
Retrocopy | CHKAITCGGITYQDQPWHADCCVGGTCS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000015644 | 2 retrocopies |
retro_dord_299, retro_dord_722 ,
|
Homo sapiens | ENSG00000022267 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010054 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009342 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014336 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000007922 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023092 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020761 | 1 retrocopy |