RetrogeneDB ID: | retro_hsap_2878 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:169663698..169664530(-) | ||
Located in intron of: | ENSG00000239219 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000244193 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FHL1 | ||
Ensembl ID: | ENSG00000022267 | ||
Aliases: | FHL1, FHL-1, FHL1A, FHL1B, FLH1A, KYOT, SLIM, SLIM-1, SLIM1, SLIMMER, XMPMA | ||
Description: | four and a half LIM domains 1 [Source:HGNC Symbol;Acc:3702] |
Percent Identity: | 85. % |
Parental protein coverage: | 93.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCL |
E.FDC.YCRDPLQ.KKYVQK..HHCCLKCFD.FCANTCVEC.KPI..DSKEVHYKN..WHD.CF.CAKCL | |
Retrocopy | EVFDCLYCRDPLQRKKYVQKGDHHCCLKCFDRFCANTCVECCKPIHVDSKEVHYKNCSWHDPCFHCAKCL |
Parental | HPL-ANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQN-VEYKGTVWHKDCFTCSNCKQVIGTGS |
HPL.ANETFVAKDNKILCNK..T.EDSPKCKGCFKA.VAGDQ...EYKGT..HKD.FTCSNCKQV.GTGS | |
Retrocopy | HPL<ANETFVAKDNKILCNKFATQEDSPKCKGCFKAFVAGDQK<MEYKGTISHKDRFTCSNCKQVMGTGS |
Parental | FFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCV |
FF.KG.DFYCVTCHETKFAKHCVKCNKAI.S.G.TY.D.PWHA..FVCVTCSKKLA.Q.FT.VEDQ.YCV | |
Retrocopy | FFSKGKDFYCVTCHETKFAKHCVKCNKAIASWGVTY*DEPWHAEGFVCVTCSKKLAVQHFTTVEDQ*YCV |
Parental | DCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL |
DCYKNFVAKKCAGCK.PITGFGKGSSVVAYEGQSWHD.CFHCKKCSVNLANK.FVFH.EQVYCPDCAKKL | |
Retrocopy | DCYKNFVAKKCAGCKHPITGFGKGSSVVAYEGQSWHDCCFHCKKCSVNLANKHFVFHEEQVYCPDCAKKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 992 .98 RPM |
bodymap2_adrenal | 0 .00 RPM | 234 .99 RPM |
bodymap2_brain | 0 .09 RPM | 122 .22 RPM |
bodymap2_breast | 0 .04 RPM | 1687 .12 RPM |
bodymap2_colon | 0 .00 RPM | 686 .67 RPM |
bodymap2_heart | 0 .02 RPM | 708 .74 RPM |
bodymap2_kidney | 0 .00 RPM | 66 .69 RPM |
bodymap2_liver | 0 .00 RPM | 18 .61 RPM |
bodymap2_lung | 0 .00 RPM | 682 .79 RPM |
bodymap2_lymph_node | 0 .33 RPM | 201 .63 RPM |
bodymap2_ovary | 0 .00 RPM | 93 .38 RPM |
bodymap2_prostate | 0 .00 RPM | 782 .44 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 4525 .77 RPM |
bodymap2_testis | 0 .11 RPM | 399 .86 RPM |
bodymap2_thyroid | 0 .00 RPM | 1431 .25 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 26 .87 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1994 |
Pongo abelii | retro_pabe_2382 |
Macaca mulatta | retro_mmul_1458 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000015644 | 2 retrocopies | |
Homo sapiens | ENSG00000022267 | 1 retrocopy |
retro_hsap_2878 ,
|
Homo sapiens | ENSG00000196923 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010054 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009342 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014336 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000007922 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023092 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020761 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .06 RPM |
CEU_NA11843 | 0 .31 RPM |
CEU_NA11930 | 0 .95 RPM |
CEU_NA12004 | 0 .11 RPM |
CEU_NA12400 | 0 .56 RPM |
CEU_NA12751 | 0 .22 RPM |
CEU_NA12760 | 0 .36 RPM |
CEU_NA12827 | 0 .42 RPM |
CEU_NA12872 | 0 .24 RPM |
CEU_NA12873 | 0 .06 RPM |
FIN_HG00183 | 0 .47 RPM |
FIN_HG00277 | 0 .22 RPM |
FIN_HG00315 | 0 .55 RPM |
FIN_HG00321 | 0 .27 RPM |
FIN_HG00328 | 0 .24 RPM |
FIN_HG00338 | 0 .62 RPM |
FIN_HG00349 | 0 .34 RPM |
FIN_HG00375 | 0 .51 RPM |
FIN_HG00377 | 0 .23 RPM |
FIN_HG00378 | 0 .08 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .11 RPM |
GBR_HG00114 | 0 .18 RPM |
GBR_HG00119 | 0 .19 RPM |
GBR_HG00131 | 0 .17 RPM |
GBR_HG00133 | 0 .46 RPM |
GBR_HG00134 | 0 .09 RPM |
GBR_HG00137 | 0 .11 RPM |
GBR_HG00142 | 0 .31 RPM |
GBR_HG00143 | 0 .29 RPM |
TSI_NA20512 | 0 .17 RPM |
TSI_NA20513 | 0 .12 RPM |
TSI_NA20518 | 0 .42 RPM |
TSI_NA20532 | 0 .54 RPM |
TSI_NA20538 | 0 .55 RPM |
TSI_NA20756 | 0 .26 RPM |
TSI_NA20765 | 0 .37 RPM |
TSI_NA20771 | 0 .06 RPM |
TSI_NA20786 | 0 .10 RPM |
TSI_NA20798 | 0 .34 RPM |
YRI_NA18870 | 0 .34 RPM |
YRI_NA18907 | 0 .10 RPM |
YRI_NA18916 | 0 .48 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .32 RPM |
YRI_NA19114 | 0 .13 RPM |
YRI_NA19118 | 0 .25 RPM |
YRI_NA19213 | 0 .14 RPM |
YRI_NA19214 | 0 .15 RPM |
YRI_NA19223 | 0 .90 RPM |