RetrogeneDB ID: | retro_ecab_1041 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | Un0076:114329..115230(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBA1C | ||
Ensembl ID: | ENSECAG00000009504 | ||
Aliases: | None | ||
Description: | tubulin, alpha 1c [Source:HGNC Symbol;Acc:20768] |
Percent Identity: | 64.82 % |
Parental protein coverage: | 67.04 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL |
M.E...IH.GQA.VQIGNAC...YCL..GIQP.GQM.SDK.IG.GDDSFN.F.S.T.AGKHV.R..FVDL | |
Retrocopy | MHERTFIHLGQASVQIGNACLKFYCLKNGIQPNGQMLSDKIIGAGDDSFNSFLSGTAAGKHVCRVMFVDL |
Parental | EPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY-TIGKEIIDLVLDRIRKLA-DQCTGLQGFLVF |
..TVIDEV.TGTY.QLFHPEQLITGKEDA.NN.....Y.TIGK.II.L....I.KL...QC...QG..VF | |
Retrocopy | KSTVIDEVHTGTYHQLFHPEQLITGKEDA-NNNYAFRY>TIGK-IIALLMY*IHKLR<NQCRSFQGL*VF |
Parental | HSFGG-GTGSGFTSLLMERLSVDYGKKSKLEFSIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDN |
HSF.G..TGS..TSL.....SV...K.SKL.FSIYPAP.QVSTAVVE...SILTTHTTLEHSDCA..V.N | |
Retrocopy | HSFAG<ATGS*STSLQVALFSVGDAKMSKLQFSIYPAP>QVSTAVVEAHDSILTTHTTLEHSDCASVVEN |
Parental | EAIYDICRRNLDIERPTYTN-LNRLISQIVS-SITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAP |
EAIYD...RNL.IE.PTYTN.L..L.......S.TA..RFDGALN..LTEFQ..L.PY..IH.PL.TYA. | |
Retrocopy | EAIYDLYYRNLNIEHPTYTN>LTTLLVRLCPPSLTAYFRFDGALNIHLTEFQAILMPYSCIHLPLVTYAL |
Parental | VISAEKAYHEQLTVAEITNACFDPTNQ |
VIS..KAYHE.LTVAEI....F.P.N. | |
Retrocopy | VISSKKAYHEHLTVAEINKVYFEPVNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .15 RPM | 148 .86 RPM |
SRP021940_placental_villous | 0 .00 RPM | 105 .99 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 49 .52 RPM |
SRP021940_testis | 0 .00 RPM | 31 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000039992 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Equus caballus | ENSECAG00000009504 | 1 retrocopy |
retro_ecab_1041 ,
|
Equus caballus | ENSECAG00000013798 | 1 retrocopy | |
Equus caballus | ENSECAG00000014403 | 1 retrocopy | |
Equus caballus | ENSECAG00000014631 | 1 retrocopy | |
Felis catus | ENSFCAG00000024852 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000010779 | 2 retrocopies | |
Mus musculus | ENSMUSG00000043091 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000028032 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015544 | 3 retrocopies |